Locus 578

Sequence ID 3R_DroMel_CAF1
Location 2,158,261 – 2,158,360
Length 99
Max. P 0.844849
window923

overview

Window 3

Location 2,158,261 – 2,158,360
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 83.50
Mean single sequence MFE -21.15
Consensus MFE -15.12
Energy contribution -14.62
Covariance contribution -0.50
Combinations/Pair 1.24
Mean z-score -1.97
Structure conservation index 0.72
SVM decision value 0.76
SVM RNA-class probability 0.844849
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2158261 99 + 27905053
UGGCCAAAAUGUCGGUGGCGAUGGCGUGAAACAAUGCAAAAUGGUAGUGGCGUCAAGAAAAAAAAGGAAAUUCGACGUUGAAAAAAACGAGAAAUUGAA
..((((....((((....)))).((((......))))....))))...((((((...................))))))........(((....))).. ( -17.31)
>DroSec_CAF1 300914 99 + 1
UGGCCAAAAUGUCGGCGGCGAUGGCGUGAAACAAUGCAAAAUGGCAGUGGCGCCAAGGAAAAAAAGAUAAUUCAACGGCUUAAAAAACGAGAAAUUGAA
..((((...(((((...(((.((........)).)))....))))).))))(((...(((..........)))...)))........(((....))).. ( -23.10)
>DroSim_CAF1 316566 99 + 1
UGGCCAAAAUGUCGGCGGCGAUGGCGUGAAACAAUGCAAAAUGGCAGUGGCGCCAAGGAAAAAAAGAUAAUUCAACGGCGUAAAAAACGAGAAAUUGAA
..((((...(((((...(((.((........)).)))....))))).))))(((...(((..........)))...)))........(((....))).. ( -23.60)
>DroAna_CAF1 272733 90 + 1
CAGCCAAAAUGUCGACGGUGAUGUCGUGAAACAAUGCAAAAUGGCGAUGGCGCCAACAAAAA------ACUUCAACGGCGUC---AACUUAAAAUUGAA
..((((...((((((((....))))).........)))...))))..(((((((........------........))))))---)............. ( -20.59)
>consensus
UGGCCAAAAUGUCGGCGGCGAUGGCGUGAAACAAUGCAAAAUGGCAGUGGCGCCAAGAAAAAAAAGAUAAUUCAACGGCGUAAAAAACGAGAAAUUGAA
..((((...(((((...(((.((........)).)))....))))).))))(((......................))).................... (-15.12 = -14.62 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:35 2006