| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,996,321 – 14,996,412 |
| Length | 91 |
| Max. P | 0.510527 |
| Location | 14,996,321 – 14,996,412 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 84.89 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -14.52 |
| Energy contribution | -16.02 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14996321 91 + 27905053 UCCUCAGGAUUUGCAUUUUCAU-UAGCGAAUCAAAGCGGAUCGAAUUAAUGCAACGAUCCAGAAAAAUGCAACCUAAUCCGCUUAGCGACCU ......((((((((((((((..-..((........))((((((...........)))))).).))))))))....)))))............ ( -22.30) >DroSec_CAF1 3834 91 + 1 UCCUCAGGAUUUGCAUUUUCAU-UAGCAAAUCAAAGCGGAUCGAAUUAAUGCAACGAUCCAGAAAAAUGCAACCUAAUCCGCUUAGCGACCU ......((((((((((((((..-..((........))((((((...........)))))).).))))))))....)))))............ ( -21.60) >DroSim_CAF1 2603 91 + 1 UCCUCAGGAUUUGCAUUUUCAU-UAGCGAAUCAAAGCGGAUCGAAUUAAUGCAACGAUCCAGAAAAAUGCAACCUAAUCCGCUUAGCGACCU ......((((((((((((((..-..((........))((((((...........)))))).).))))))))....)))))............ ( -22.30) >DroEre_CAF1 3878 91 + 1 UCCUCAAGAUUUGCAUUUUCAU-UAGCGAAUCAAAGCGGAUCGCAUUUAUGCAACGAUCCAGAAAAAUGCAACCUAAUCCGCUUAGCAACCU .......(((((((........-..))))))).((((((((.((((((.((........))...))))))......))))))))........ ( -20.70) >DroYak_CAF1 2955 91 + 1 UCCUCAGGAUUUGCAUUUUCAU-UAGCGAAUCAAAGCGGAUAGAAUUUAUGCAACGAUCCAGAAAAAUGCAACCUAAUCCGCUUAGCAAUCU .......(((((((........-..))))))).((((((((((......((((..............))))..)).))))))))........ ( -18.94) >DroPer_CAF1 2614 76 + 1 ACCGCAAGAUUUGCAUUUGCAUUUAGGGAUACGAUGAGGAU---------UCAGUGAACCAGAAAACUGCAUGAUAAUCCGCUUA------- ...((......(((....))).....((((...(((((..(---------((.(....)..)))..)).)))....))))))...------- ( -11.50) >consensus UCCUCAGGAUUUGCAUUUUCAU_UAGCGAAUCAAAGCGGAUCGAAUUAAUGCAACGAUCCAGAAAAAUGCAACCUAAUCCGCUUAGCGACCU ......((((((((((((((.....((........))((((((...........)))))).))))).))))....)))))............ (-14.52 = -16.02 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:13 2006