| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,992,091 – 14,992,207 |
| Length | 116 |
| Max. P | 0.555450 |
| Location | 14,992,091 – 14,992,207 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.64 |
| Mean single sequence MFE | -19.65 |
| Consensus MFE | -14.85 |
| Energy contribution | -14.85 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14992091 116 + 27905053 CAGAACCGGUUAUUUUGACCAGGCAAAACCAAAAAAAA---AAAAGCCAAAAAUUGAAUUUACCUCUGACGUCAACACCCACCCGACCAAAAGGUCGUAUUCAAAUUCGCGCUCAGAAU- .......((((.....)))).(((..............---....)))................((((((((...........(((((....)))))...........))).)))))..- ( -21.52) >DroSec_CAF1 11498 117 + 1 CAGAACCGGUUAUUUUGACCAGGCAAAACAAA--AAAAGCCAAAAACCAAAAAUUGAAUUUACCUCUGACGUCAACACCCACCCGACCAAAAGGUCGUAUUCAAAUUCGCGCUCAAAAU- ((((...((((.....)))).(((........--....))).......................)))).(((...........(((((....)))))...........)))........- ( -18.55) >DroSim_CAF1 11176 119 + 1 CAGAACCGGUUAUUUUGACCAGGCAAGACAAAAAAAAAGCCAAAAACCAAAAAUUGAAUUUACCUCUGACGUCAACACCCACCCGACCAAAAGGUCGUAUUCAAAUUCGCGCUCAAAAU- ((((...((((.....)))).(((..............))).......................)))).(((...........(((((....)))))...........)))........- ( -18.39) >DroEre_CAF1 11217 120 + 1 CAAAACCGGUUAUUUUGACCAGGCAAAACAAAAAAAAAGCCAAAAACCAAAAAUUGAAUUUACCUCUGACGUCAACACCCACCCGACCAAAAGGUCGUAUUCAAAUUCGCGCUCAAAACU (((....((((.....)))).(((..............)))............)))..........((((((...........(((((....)))))...........))).)))..... ( -17.39) >DroYak_CAF1 11607 117 + 1 CAGAACCGGUUAUUUUGACCAGGCAAAACAAA---AAAGCCAAAAACCAAAAAUUGAAUUUACCUCUGACGUCAACACCCACCCGACCAAGAGGUCGUAUUCAAAUUCGCGCUCAAAACU ..(((..((((.....)))).(((........---...)))............((((((..((((((...(((...........)))..))))))...)))))).)))............ ( -22.40) >consensus CAGAACCGGUUAUUUUGACCAGGCAAAACAAAAAAAAAGCCAAAAACCAAAAAUUGAAUUUACCUCUGACGUCAACACCCACCCGACCAAAAGGUCGUAUUCAAAUUCGCGCUCAAAAU_ .....((((((.....)))).))...........................................((((((...........(((((....)))))...........))).)))..... (-14.85 = -14.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:09 2006