| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,146,606 – 2,146,705 |
| Length | 99 |
| Max. P | 0.542387 |
| Location | 2,146,606 – 2,146,705 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.88 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -20.51 |
| Energy contribution | -20.79 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2146606 99 + 27905053 AGAAUGCCCAUUUCUUUAAGCCCCACCCAGCGAAUGACGCCGGGGUCCUGCAUGCUUGGGGCCUUGGCACCACAC------------AACAG---------GCACAACAUCAGACGCACC ((((.......))))..............(((..(((.(((((((((((........))))))))))).((....------------....)---------).......)))..)))... ( -27.80) >DroGri_CAF1 299229 111 + 1 AAAAUGCGAAUUACUUUAAGCCGCACUCAGCAAACGAUGUAAAUGAGCUGCAUGGUUGGGGCUUGGGCACAACACAACCGCACACCAAACAG---------CAUCAGCCAUCUGCUAACC ....((((..(((...)))..))))...((((...((((....(((((((..((((((.((.((((......).))))).)).))))..)))---------).)))..)))))))).... ( -29.20) >DroSec_CAF1 289345 99 + 1 AGAAUGCCCAUUUCUUUAAGCCCCACCCGGCGAAUGAUGCCGGGGUCCUGCAUGCUUGGGGCCUUGGCACCACAC------------AACAG---------GCACAACAUCAGACGCACC ....((((...........(((......)))...((.((((((((((((........)))))))))))).))...------------....)---------)))................ ( -31.50) >DroSim_CAF1 304648 99 + 1 AGAAUGCCCAUUUCUUUAAGCCCCACCCGGCGAAUGACGCCGGGGUCCUGCAUGCUUGGGGCCUUGGCACCACAC------------AACAG---------GCACAACAUCAGACGCACC ....((((...........(((((((((((((.....)))))))(.....).....)))))).(((........)------------))..)---------)))................ ( -31.10) >DroEre_CAF1 293542 99 + 1 AGAAUGCCCAUAACUUUAAGCCCCACCCGGCGAAUGACGCCGGGGUCCUGCAUGCUUGGGGCCUUGGCACCACAC------------AACAG---------GCACAACAUCAGCCGCACC ....(((............(((((((((((((.....)))))))(.....).....)))))).............------------....(---------((.........)))))).. ( -31.70) >DroYak_CAF1 294781 108 + 1 AGAAUGCCCAUUACUUUAAGCCCCACCCGGCAAACGAUGCCGGUGUCCUGCAUGCUUGGGGCCUUGGCAUCACAC------------AACAGGCACAACAGGCACAACAUCAGACGCACC ....(((............((...((((((((.....)))))).))...)).((((((..((((((........)------------)..))))....))))))...........))).. ( -29.50) >consensus AGAAUGCCCAUUACUUUAAGCCCCACCCGGCGAAUGACGCCGGGGUCCUGCAUGCUUGGGGCCUUGGCACCACAC____________AACAG_________GCACAACAUCAGACGCACC ....((((...........(((((((((((((.....)))))))(.....).....))))))...))))................................................... (-20.51 = -20.79 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:32 2006