Locus 5757

Sequence ID 3R_DroMel_CAF1
Location 14,987,305 – 14,987,407
Length 102
Max. P 0.528971
window9435

overview

Window 5

Location 14,987,305 – 14,987,407
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 82.27
Mean single sequence MFE -39.73
Consensus MFE -22.60
Energy contribution -22.58
Covariance contribution -0.02
Combinations/Pair 1.39
Mean z-score -2.18
Structure conservation index 0.57
SVM decision value -0.01
SVM RNA-class probability 0.528971
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14987305 102 - 27905053
GGCUGUCAUUGAUUCU---CCCGUGGAGCAUCAUACGCAGCAGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGUUGGCCUACAGUGUGCUCAUGUUCACGCU
.(((((...((((.((---((...)))).))))...))))).(.(((.((.((((.((((((....)))))))))).)).))).)((((((........)))))) ( -39.10)
>DroSec_CAF1 6887 102 - 1
GGCUGUCAUUGAUUCU---CCCGUGGAGCAUCAUACGCAGCCGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU
((((((...((((.((---((...)))).)))).))((((((((((((.(((........)))..)))))))))))).))))...((((((........)))))) ( -45.10)
>DroSim_CAF1 6475 102 - 1
GGCUGUCAUUGAUUCU---CCCGCGGAGCAUCAUACGCAGCCGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU
((((((...((((.((---((...)))).)))).))((((((((((((.(((........)))..)))))))))))).))))...((((((........)))))) ( -45.10)
>DroEre_CAF1 6857 102 - 1
GGCUGCCAUUGAUCCU---CCCGUGGAGAAUUAUACUCAGGAGGAAGACACCAGCGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU
(((.........((((---((....(((.......))).))))))...((.((((.((((((....)))))))))).)))))...((((((........)))))) ( -38.20)
>DroYak_CAF1 6469 102 - 1
GGCUGUCAUUGAUCCU---CCCGUGGAGCAUCAUACUCAGCAGGAGGACACUAGUGCGGAGGUCUUCCUAUGGCUGCUGGCCUACAGUGUCCUCAUGUUCACGCU
.((((....((((.((---((...)))).))))....))))..(((((((((.(((...(((....)))..(((.....)))))))))))))))........... ( -37.80)
>DroMoj_CAF1 5882 99 - 1
GGAAGUU---GAGCCUAAGC---CCGAGGCUGAGCAACAAUAUGUGGACAAGAGCUUAGAGGUGUUUCUCUGGCUAAUGGCAUACAGCGUGCUCAUGUUUACAUU
....(((---.(((((....---...))))).)))......(((((((((.((((.((((((....))))))((.....)).........)))).))))))))). ( -33.10)
>consensus
GGCUGUCAUUGAUCCU___CCCGUGGAGCAUCAUACGCAGCAGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU
.(((((...((((.((..........)).))))...))))).((....((.((((.((((((....)))))))))).)).))...((((((........)))))) (-22.60 = -22.58 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:00 2006