Locus 5743

Sequence ID 3R_DroMel_CAF1
Location 14,958,429 – 14,958,542
Length 113
Max. P 0.898394
window9411

overview

Window 1

Location 14,958,429 – 14,958,542
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 85.18
Mean single sequence MFE -26.51
Consensus MFE -17.38
Energy contribution -18.75
Covariance contribution 1.38
Combinations/Pair 1.22
Mean z-score -2.52
Structure conservation index 0.66
SVM decision value 1.00
SVM RNA-class probability 0.898394
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14958429 113 - 27905053
UUCUCAUUUCAAUUUAUUCGUAAAUUGCCACUGUUUUUAUACCAAAACCUUAUUAUUUGUUUACCUGUUGACUUGCAGAGAAGACGAUGGGUUUUUGCGACUGAAGUAUAUUA
............((((.(((((((..(((...(((((......)))))........((((((.(((((......)))).).))))))..))).))))))).))))........ ( -20.40)
>DroSec_CAF1 8574 109 - 1
UUCUCAUUUCAAAUUAUUCGCAAAUUGCCACUGUUUUUAUACCAAAA----ACUAUUUUUUUACCUGUUGACUUGCUGAGAAGACGGUGGCUUUUUGCGACUGAAGUAUAUUG
.....((((((......(((((((..((((((((((((.((.(((.(----((.............)))...))).)).))))))))))))..))))))).))))))...... ( -31.12)
>DroSim_CAF1 8633 109 - 1
UUCUCAUUUCAAAUUACUCGUGAAUUGCCACUGUUUUUAUAACAAAA----AUUAUUUGUUUACCUGUUGACUUGCUGAGAAGACGGUGGCUUUUUGCGACUGAAGUAUAUUU
.....((((((......(((..((..((((((((((((..((((((.----....)))))).....((......))...))))))))))))..))..))).))))))...... ( -28.60)
>DroYak_CAF1 8945 110 - 1
UUCUCAUUUAGAAUGUUUCGUCGAUUGGCUCUAUUUUUAUAGUAAAAC---AAUGUUUGUUUACCUGUUGACUUGCAGAAAAUACGGUGGUUUUCUGCGACUGAAGAAUAUUU
...((.(((((........((((((.((..((((....))))..((((---(.....))))).)).))))))(((((((((((......))))))))))))))))))...... ( -25.90)
>consensus
UUCUCAUUUCAAAUUAUUCGUAAAUUGCCACUGUUUUUAUACCAAAA____AUUAUUUGUUUACCUGUUGACUUGCAGAGAAGACGGUGGCUUUUUGCGACUGAAGUAUAUUU
.................(((((((..((((((((((((....((((.........)))).....((((......)))).))))))))))))..)))))))............. (-17.38 = -18.75 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:37 2006