Locus 574

Sequence ID 3R_DroMel_CAF1
Location 2,143,358 – 2,143,455
Length 97
Max. P 0.559618
window917

overview

Window 7

Location 2,143,358 – 2,143,455
Length 97
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 81.02
Mean single sequence MFE -29.10
Consensus MFE -15.94
Energy contribution -18.50
Covariance contribution 2.56
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.55
SVM decision value 0.05
SVM RNA-class probability 0.559618
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2143358 97 - 27905053
------ACAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACCACUCGGCGGCAUGCUGGAUGA--GGAUGUUCUAGCGCAACUU
------........(((((.((((((..((..(((....)))..))..))))))........)))))((..((..((((((...--......))))))))..)). ( -29.80)
>DroSim_CAF1 301309 97 - 1
------ACAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACCACUCGGCGGCAUGCUGGAUGA--GGAUGUUCUAGCGCAACUU
------........(((((.((((((..((..(((....)))..))..))))))........)))))((..((..((((((...--......))))))))..)). ( -29.80)
>DroEre_CAF1 290280 94 - 1
------ACACUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCCCUACUCAGGG---UGCUGGAUGA--GGAUGUUCUAGCGCAACUU
------.((((....)))).((((((..((..(((....)))..))..))))))......(((....)))(---(((((((...--......))))))))..... ( -33.20)
>DroYak_CAF1 291494 99 - 1
AAG---AGAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACUUCUCAGGG---UGCUCGAUGAGCGGAUGUUCUAGCGCAACUU
..(---(((.....(((...((((((..((..(((....)))..))..))))))..)))....))))...(---((((....((((....)))).)))))..... ( -31.10)
>DroAna_CAF1 259012 84 - 1
--AUGAACAC---UGAGUGACGCUUUUGGGUUAAGGAAAGUUUUGCUG------AUUUCCAGCUUACAGGA---UGCUC-------GGGUGUUCUUGCGCAACUA
--..((((((---((((((...(((.((((((..(((((.........------.))))))))))).))).---)))))-------.)))))))........... ( -21.60)
>consensus
______ACAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACCACUCAGGG___UGCUGGAUGA__GGAUGUUCUAGCGCAACUU
.............((((((.((((((((((..(((....)))..))))))))))........)))))).......((((((...........))))))....... (-15.94 = -18.50 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:29 2006