a score=0
s 3R_DroMel_CAF1 14948306 117 + 27905053 CAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUAAAUGUUGCCUCAAAACAAGCCAGAAACUAUAAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAGCAU
s DroSec_CAF1 83999 117 + 1 CAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUGAAUGUUGCCUUAAAAUAAGCCAGAAACUGCGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAU
s DroSim_CAF1 76921 117 + 1 CAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUAAAUGUUGCCUCAAAAUAAGCCAGAAACUGUGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAU
s DroYak_CAF1 80990 119 + 1 CAAUGGGUCAACUUUCCUUGGCGCUGCUGGCGUUGAUAAAUGUUGCC-CAAAACAAGCCAGAAACUGUGGUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAU