Locus 572

Sequence ID 3R_DroMel_CAF1
Location 2,135,985 – 2,136,098
Length 113
Max. P 0.778613
window912

overview

Window 2

Location 2,135,985 – 2,136,098
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 87.02
Mean single sequence MFE -19.64
Consensus MFE -15.59
Energy contribution -17.34
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.79
SVM decision value 0.55
SVM RNA-class probability 0.778613
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2135985 113 + 27905053
UCUGCUACCACUAUUUCACUAGCCAGUUUUACAACGGCUUCCACAGAGAAGCAAAAUAAAAAAACACGACCUCCUCAGAAGCAGAAAGCUGGCCCAAAUUAUAAACCAAAACA
.....................(((((((((......(((((....(((......................)))....)))))..))))))))).................... ( -19.15)
>DroSec_CAF1 279038 113 + 1
UUUGCGACCACUAUUUCACCAGCCAGUUUUACAACGGCUUCCACAGAAAAGCGAAAUAAAAAAACACGACCUCCUCAGAUGCAGAAAGCUGGCCCAAAUUAUGAACCAAAACA
((((.(..((..((((.....(((((((((.((.(.((((........))))...............((.....)).).))...)))))))))..))))..))..)))))... ( -14.90)
>DroEre_CAF1 283031 113 + 1
CCGGCAACCACUAUUUCACCAGCCAGUUUUCCAACGGCUUCCAUAGAGAAGCGGAAGAAAAAAACAGGACCUUCUCAGAAGCAGAAAGCUGGCCUGAAUCAUGAACCAAAACA
..((....((....((((...((((((((((.....(((((....((((((.(................))))))).))))).)))))))))).))))...))..))...... ( -28.59)
>DroYak_CAF1 284586 113 + 1
UCCGCAACAACUAUUUCACCAGCCAGAUUUACAACGGCUUCCAUAGAAAAACGCAAUAAAAAAACACGACCUUCUCCGAAGCAGAAAACUGGCAUAAAAUAUGAACAAAAACA
.....................(((((.(((......(((((...((((...((.............))...))))..)))))..))).))))).................... ( -15.92)
>consensus
UCUGCAACCACUAUUUCACCAGCCAGUUUUACAACGGCUUCCACAGAAAAGCGAAAUAAAAAAACACGACCUCCUCAGAAGCAGAAAGCUGGCCCAAAUUAUGAACCAAAACA
.....................(((((((((......(((((....((((((...................)))))).)))))..))))))))).................... (-15.59 = -17.34 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:25 2006