Locus 570

Sequence ID 3R_DroMel_CAF1
Location 2,131,340 – 2,131,451
Length 111
Max. P 0.567644
window907

overview

Window 7

Location 2,131,340 – 2,131,451
Length 111
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -26.75
Consensus MFE -18.50
Energy contribution -19.65
Covariance contribution 1.15
Combinations/Pair 1.35
Mean z-score -1.21
Structure conservation index 0.69
SVM decision value 0.07
SVM RNA-class probability 0.567644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2131340 111 + 27905053
AAAUUUUAACU---UUCGACA-AUAUACAGAAGUUGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUGAAUGGCUAUAUAGUAGCCAAACUGGAAAACCUUCUGAGAACGCG
...........---.......-.....(((((((((....)))))...(((((....(((((....)))))..(((((((...))))))).))))).......))))........ ( -29.20)
>DroSec_CAF1 274635 114 + 1
AAUUGUUAAUUCUAUUCUAUU-UUAUAUAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUAAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAAAACGCG
.....................-.....((((((((((.....))))..(((((.....((((....))))...(((((((...))))))).))))).....))))))........ ( -26.20)
>DroSim_CAF1 294108 114 + 1
AAAUGUUAAUUAUAUUCUAUU-UUAUAUAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUGAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAAAACGCG
....(((...((((.......-.))))((((((((((.....))))..(((((....(((((....)))))..(((((((...))))))).))))).....))))))..)))... ( -28.70)
>DroEre_CAF1 278126 111 + 1
AAAUAUCAAUU----UCUAUUUAUAAACAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACCCGCUUGAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAGAACGCG
...........----............((((((((((.....))))..(((((....(((((....)))))..(((((((...))))))).))))).....))))))........ ( -30.60)
>DroWil_CAF1 285139 113 + 1
AAUUGGGAAAUUUUUGUAAAU-C-CUACAGAAGUGGCUCGAAGCUAUCCCAGUGAUCCCAAUACACGCCUAAAUGGUUAUAUACUCGCCAAAAUGGAGAAUCUUUUAAAGACACG
...(((((.(((((((((...-.-.)))))))))(((.....))).)))))(((.((.........(((.....))).......((.((.....)).))..........))))). ( -23.30)
>DroAna_CAF1 247493 112 + 1
AAAUUUGAUAUUUAUUUUAUU-U--UAUAGAAGUAGCUCGAAGCUAUCCUAGUGAUCCCAGCACUCGAUUGAACGGCUAUAUUGUGGCCAAGUUGGAGAAUAUCCUGAAGACGCG
......(((((((........-.--..(((..(((((.....))))).)))......(((((..((....))..((((((...))))))..))))).)))))))........... ( -22.50)
>consensus
AAAUGUUAAUU_UAUUCUAUU_UUAUACAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUGAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAAAACGCG
...........................((((((((((.....))))..(((((....(((((....)))))..((((((.....)))))).))))).....))))))........ (-18.50 = -19.65 +   1.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:20 2006