Locus 5685

Sequence ID 3R_DroMel_CAF1
Location 14,911,242 – 14,911,336
Length 94
Max. P 0.977412
window9294

overview

Window 4

Location 14,911,242 – 14,911,336
Length 94
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 80.75
Mean single sequence MFE -23.24
Consensus MFE -14.76
Energy contribution -15.80
Covariance contribution 1.04
Combinations/Pair 1.06
Mean z-score -2.60
Structure conservation index 0.64
SVM decision value 1.79
SVM RNA-class probability 0.977412
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14911242 94 - 27905053
GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAGCAG------------CAGUAGAAAAAACUUCACCCCUUCCCUUCAUAUCGAUAAAAA
((.....(((((....)))))...(((((.(((((.....)))))))))).)------------)....(((.....))).......................... ( -21.60)
>DroSec_CAF1 38465 91 - 1
GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAGCAGC---------GGCAGCAGCAAAAACUUCACC------CUUCCUAUCGAUAAAAA
((......((((....))))(((.(((((((((((.....))))))..)))))---------))).))...............------................. ( -26.80)
>DroSim_CAF1 38393 82 - 1
GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAG------------------CGGCAAAAACUUCACC------CUUCCUAUCGAUAAAAA
(((((..........)))))(((.(((((.(((((.....)))))))))------------------))))............------................. ( -23.60)
>DroEre_CAF1 37876 95 - 1
GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGC------AGAAGCAGCAGCAGCAACAAAAACUUCACCC-----CUUCCUAUCGAUGAAAA
((......((((....))))((..(((((((((((.....)))))).------....))))).)).))................-----................. ( -21.60)
>DroYak_CAF1 44832 96 - 1
GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUGUGCAGCAGCAGAAGCAGAAGCAGCAGCGAAAACUUCACC----------CUAUCUAUAAAAA
((.....(((((....)))))...(((((.(.(((.....))).)))))).)).((((.....((....)).....))))...----------............. ( -22.60)
>consensus
GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAGCAG___________GCAGCAGCAAAAACUUCACC______CUUCCUAUCGAUAAAAA
((.....(((((....)))))...(((((.(((((.....))))))))))................))...................................... (-14.76 = -15.80 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:42 2006