Locus 5657

Sequence ID 3R_DroMel_CAF1
Location 14,845,240 – 14,845,341
Length 101
Max. P 0.643541
window9244

overview

Window 4

Location 14,845,240 – 14,845,341
Length 101
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 81.80
Mean single sequence MFE -27.70
Consensus MFE -17.64
Energy contribution -18.08
Covariance contribution 0.44
Combinations/Pair 1.10
Mean z-score -1.81
Structure conservation index 0.64
SVM decision value 0.23
SVM RNA-class probability 0.643541
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14845240 101 + 27905053
UCUUGAGCAAACACUAC------CACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUUAGCC---ACCCAUGUAGUGAUGUAGUG
...........((((((------....((((((..........(((((....))))).((((.(((((..(....)..)))))))))---.....))).)))..)))))) ( -27.10)
>DroSec_CAF1 7929 104 + 1
ACUUGAGCAAACACUAC------CACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUGAGCCACCACCCAUGUAGUGAUGUAGUG
...........((((((------....((((((..........(((((....))))).(((((((.((..(....)..)))))))))........))).)))..)))))) ( -29.40)
>DroEre_CAF1 17222 85 + 1
AC---------------------CACCUACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACUCUUGAGCC---ACCCAUGUAGUG-UGUAGUG
..---------------------...(((((((..((......(((((....))))).((((((..(((((....).))))))))))---......))..))-))))).. ( -28.60)
>DroYak_CAF1 8267 99 + 1
UCUUGAGCAAACACUAUAACAAAAACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUGAGCC---ACCCAUGUAG--------UG
...........(((((((.........................(((((....))))).(((((((.((..(....)..)))))))))---.....)))))--------)) ( -25.70)
>consensus
ACUUGAGCAAACACUAC______CACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUGAGCC___ACCCAUGUAGUG_UGUAGUG
...........................((((((..........(((((....))))).(((((((.((..(....)..)))))))))........))).)))........ (-17.64 = -18.08 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:54 2006