Locus 565

Sequence ID 3R_DroMel_CAF1
Location 2,104,821 – 2,104,931
Length 110
Max. P 0.883822
window898

overview

Window 8

Location 2,104,821 – 2,104,931
Length 110
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -35.03
Consensus MFE -21.15
Energy contribution -20.85
Covariance contribution -0.30
Combinations/Pair 1.26
Mean z-score -2.03
Structure conservation index 0.60
SVM decision value 0.93
SVM RNA-class probability 0.883822
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2104821 110 - 27905053
AACCCUUAAUCCCACCCAGUCCA------CUCACCUUCCUCUAGUCCGCGUCCAAUCUCAUCGGAUGUGAGCUUGGGGAAGCUGACCUGCAGGGAGUGACCGUUGAAGAAGUAGCU
(((..(((.((((...(((....------.(((.(((((((.((..(((((((.........)))))))..)).))))))).))).)))..)))).)))..)))............ ( -34.40)
>DroPse_CAF1 223918 97 - 1
-------------UUCCGUUCG------UCUUACCUUCCUCGAGCCCGCGUCCAAUCUCAUCGGAUGUCAGCUUGGGGAAGCUGACCUGCAGCGAAUGGCCAUUAAAGAAGUAGCU
-------------..((((((.------.......((((((((((..((((((.........))))))..))))))))))((((.....))))))))))................. ( -35.50)
>DroGri_CAF1 255877 97 - 1
-------------AGUUUUCGA------GCUUACCUUCUUCGAGGCCGCGUCCAAUCUCCUCGGAUGUCAAUUUGGGGAAGCUGACCUGCAGCGAGUGCCCGUUGAAGAAGUAGCU
-------------........(------(((...(((((((((((.(((........(((((((((....))))))))).((((.....))))..))).)).))))))))).)))) ( -35.70)
>DroEre_CAF1 249893 99 - 1
-----------------AGCCAACUGUUUCCUACCUUCCUCUAGGCCGCGUCCAAUCUCCUCGGAUGUGAGCUUGGGGAAGCUGACCUGCAGGGAGUGCCCGUUGAAGAAGUAGCU
-----------------(((..(((.((((..(((((((.(((((((((((((.........))))))).)))))))))))..........(((....))))).)))).))).))) ( -34.50)
>DroYak_CAF1 251370 98 - 1
-----------------GGGAAACU-UUUCUUACCUUCCUCUAGUCCGCGUCCAAUCUCAUCGGACGUGAGCUUGGGGAAGCUGACCUGCAGGGAAUGCCCGUUGAAGAAGUAGCU
-----------------((....))-((((((..(((((((.((..(((((((.........)))))))..)).)))))))..........(((....)))....))))))..... ( -34.20)
>DroPer_CAF1 225858 97 - 1
-------------UUCCAUUCG------UCUUACCUUCCUCGAGCCCGCGUCCAAUCUCAUCGGAUGUCAGCUUGGGGAAGCUGACCUGCAGCGAAUGGCCAUUAAAGAAGUAACU
-------------..((((((.------.......((((((((((..((((((.........))))))..))))))))))((((.....))))))))))................. ( -35.90)
>consensus
_______________CCAGUCA______UCUUACCUUCCUCGAGCCCGCGUCCAAUCUCAUCGGAUGUCAGCUUGGGGAAGCUGACCUGCAGCGAAUGCCCGUUGAAGAAGUAGCU
..............................(((((((((((.(((..((((((.........))))))..))).)))))))(((.....)))..................)))).. (-21.15 = -20.85 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:11 2006