Locus 5640

Sequence ID 3R_DroMel_CAF1
Location 14,830,295 – 14,830,415
Length 120
Max. P 0.701165
window9198

overview

Window 8

Location 14,830,295 – 14,830,415
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -27.83
Consensus MFE -25.98
Energy contribution -25.76
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.93
SVM decision value 0.35
SVM RNA-class probability 0.701165
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14830295 120 + 27905053
CCCCAAAAUGUGGCGGUGGCCUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAUCCGAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU
.......(((((((((..(.......)..))))..(((((((.(((((((...............)))))))((..((.((.....)).))..))......))))))).......))))) ( -28.46)
>DroSec_CAF1 8469 120 + 1
CCCCAAAAUGUGGCGGUGACUUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAGCCCAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU
.......(((((((((..((....).)..))))..(((((((.(((((((...............)))))))................(....).......))))))).......))))) ( -25.96)
>DroSim_CAF1 8630 120 + 1
CCCCAAAAUGUGGCGGUGGCUUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAGCCGAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU
.......(((((((((((((........))))).)))).....(((((((...............)))))))(((((..((((.....(....).....)))))))))........)))) ( -29.06)
>consensus
CCCCAAAAUGUGGCGGUGGCUUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAGCCGAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU
.......(((((((((..((....).)..))))..(((((((.(((((((...............)))))))................(....).......))))))).......))))) (-25.98 = -25.76 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:12 2006