Locus 564

Sequence ID 3R_DroMel_CAF1
Location 2,101,572 – 2,101,664
Length 92
Max. P 0.940321
window897

overview

Window 7

Location 2,101,572 – 2,101,664
Length 92
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 69.73
Mean single sequence MFE -21.85
Consensus MFE -13.98
Energy contribution -14.06
Covariance contribution 0.08
Combinations/Pair 1.47
Mean z-score -1.68
Structure conservation index 0.64
SVM decision value 1.31
SVM RNA-class probability 0.940321
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2101572 92 - 27905053
GUCUUUCCGCGGGCAAGGCCAGCUGAAGUGCACUCAACAAAUUCGGCUAGCCUUUUCUGUAAAAAA--AAGUUCAUUCUGUGAUAUUAGACAUU
((((....(((((.(((((.(((((((..............))))))).))))).)))))......--....((((...))))....))))... ( -25.04)
>DroSec_CAF1 244510 94 - 1
GGCUUUCCGCGGGCAAGGCCAGCCGAAGUGCACUGGAAAAUUUCGGUUGGCCUUUUUCAUAAAAAAAAGAGUUAAUUCUUAACCAUUAAAUAUU
((........(((.(((((((((((((((..........))))))))))))))).)))........(((((....)))))..)).......... ( -28.90)
>DroSim_CAF1 247674 93 - 1
GGCUUUCCGCGGGCAAGGCCAACCGAAGUGCACUUUAAAAAAUCGGUUUGCGUUUUCCGUAAA-AAAAGAGUUCUUUCUUAACCAUUAAAUAUA
((......(((((.((.((.((((((..(..........)..)))))).)).)).)))))...-..(((((....)))))..)).......... ( -20.60)
>DroEre_CAF1 246707 92 - 1
UGCUUACCACGGGCAAGGCCAGUCGGAGUGCACUUAGCAAAUUCGGUUAACCUUUUCCGUAGAA--AAGAGUCCAGCUUUUAUCAAUAAAGAAG
..(((...(((((.((((..(..((((.(((.....)))..))))..)..)))).))))).((.--(((((.....))))).))....)))... ( -22.40)
>DroYak_CAF1 248250 74 - 1
CACUUACCGCGGGCAAGGCCAGCCGAAGUGCACUUAACAAAUUCUGUUAACCUUUUUCUU--------------------AAUCAUAAAAUAUU
(((((.(.((.(((...))).)).))))))...((((((.....))))))..........--------------------.............. ( -12.30)
>consensus
GGCUUUCCGCGGGCAAGGCCAGCCGAAGUGCACUUAACAAAUUCGGUUAGCCUUUUCCGUAAAAAAAAGAGUUCAUUCUUAACCAUUAAAUAUU
........(((((.(((((.(((((((..............))))))).))))).))))).................................. (-13.98 = -14.06 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:10 2006