Locus 5605

Sequence ID	3R_DroMel_CAF1
Location	14,789,865 – 14,789,957
Length	92
Max. P	0.945003

overview

Window 2

Location	14,789,865 – 14,789,957
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	88.01
Mean single sequence MFE	-22.56
Consensus MFE	-18.07
Energy contribution	-18.35
Covariance contribution	0.28
Combinations/Pair	1.08
Mean z-score	-2.11
Structure conservation index	0.80
SVM decision value	1.35
SVM RNA-class probability	0.945003
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14789865 92 - 27905053
AUGGCUGGCAUAAUUAUGCAUAUUAUGUUGCAGGGGGUCGUUCCCUAAGUGCAUAUUUGCGUUGGCUAUUAGGUAAAUUGAGACUAAUUUAU
(((((..((.(((.(((((((....((...))(((((....)))))..))))))).))).))..)))))...((((((((....)))))))) ( -25.60)
>DroPse_CAF1 46535 85 - 1
CAGGCGGGCAUAAUUAUGCAUAUUAUGUUGCAGGG--AC-----UUAAGUGCAUAUUUGUGUUAGCUAUCAGGUAAAUUGGGUCUAAUUUAU
..(((..((((((.(((((((.(((.(((.....)--))-----.)))))))))).))))))..))).....((((((((....)))))))) ( -23.10)
>DroSim_CAF1 50084 87 - 1
AUGGCUGGCAUAGUUAUGCAUAUUAUGUUGCAGGGGGUC-----CUAAGUGCAUAUUUGCGUUAGCUAUUAGGUAAAUUGAGACUAAUUUAU
(((((((((.(((.(((((((..........(((....)-----))..))))))).))).)))))))))...((((((((....)))))))) ( -19.70)
>DroAna_CAF1 51034 85 - 1
GUGGCAGGCAUAAUUAUGCAUAUUAUGUUGCAGGG--UC-----UUAAGUGCAUAUUUGUGUUAGCCAUCAGGUAAAUUGAGUCUAAUAUAU
.((((..((((((.(((((((.(((..........--..-----.)))))))))).))))))..))))((((.....))))........... ( -21.32)
>DroPer_CAF1 46647 85 - 1
CAGGCGGGCAUAAUUAUGCAUAUUAUGUUGCAGGG--AC-----UUAAGUGCAUAUUUGUGUUAGCUAUCAGGUAAAUUGGGUCUAAUUUAU
..(((..((((((.(((((((.(((.(((.....)--))-----.)))))))))).))))))..))).....((((((((....)))))))) ( -23.10)
>consensus
AUGGCGGGCAUAAUUAUGCAUAUUAUGUUGCAGGG__UC_____UUAAGUGCAUAUUUGUGUUAGCUAUCAGGUAAAUUGAGUCUAAUUUAU
..(((..((((((.(((((((...........................))))))).))))))..))).....((((((((....)))))))) (-18.07 = -18.35 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:10 2006