Locus 5604

Sequence ID 3R_DroMel_CAF1
Location 14,789,101 – 14,789,200
Length 99
Max. P 0.892678
window9131

overview

Window 1

Location 14,789,101 – 14,789,200
Length 99
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 66.98
Mean single sequence MFE -21.91
Consensus MFE -8.21
Energy contribution -10.45
Covariance contribution 2.24
Combinations/Pair 1.23
Mean z-score -2.06
Structure conservation index 0.37
SVM decision value 0.97
SVM RNA-class probability 0.892678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14789101 99 + 27905053
C---AAGGCUGCU---CGAGUGGCAGUCGGUGUUCUUAUCCGC-CCCCUCAAAAUCUCUUUGACUGCCGCUUGCAU------UUCCAUUAUGUCAAUUU------GCUCCUUCUUCUC--
.---((((..((.---.(((((((((((((((........)))-).....(((.....))))))))))))))((((------.......))))......------)).))))......-- ( -26.40)
>DroPse_CAF1 45737 82 + 1
G---AAGGCUGCC---CGAGUGGCAGU--------------GC-CUCCCCUCAAUCUCUUUGAUUACCUC---CAU------AUCCAUUAUGUCAAUUU------CUCUCUUCAUUCU--
(---(((((((((---.....))))))--------------..-........((((.....)))).....---(((------(.....)))).......------....)))).....-- ( -14.90)
>DroSim_CAF1 49324 102 + 1
C---AAGGAUGCUCGUCGAGUGGCAGUCGGUGUUCUUAUCCGC-CCCCUUAAAAUCUCUUUGACUGCCGCUUGCAU------UUCCAUUAUGUCAAUUU------GCUCCUUCUUCUC--
.---(((((.((.....(((((((((((((((........)))-).....(((.....))))))))))))))((((------.......))))......------)))))))......-- ( -28.50)
>DroAna_CAF1 50371 120 + 1
CGAGAAGGAUACUCGAGUGGUGGCAGUCGGUGUUUUUAUCCAUUCUCCUUUCAAUCUCUUUGACUGCCGCCAGCAUUCUCGUUUCCAUUAUGUCAAUUUAACCCAGCGCCUUCCCCCUGC
......(((....(((((((((((((((((.............................))))))))))))).....))))..))).................................. ( -27.85)
>DroPer_CAF1 45839 82 + 1
G---AAGGCUGCA---CGAGUGGCAGU--------------GC-CUCCCCUCAAUCUCUUUGAUUACCUC---CAU------AUCCAUUAUGUCAAUUU------CUCUCUUCAUUCU--
(---((((((((.---......)))))--------------..-........((((.....)))).....---(((------(.....)))).......------....)))).....-- ( -11.90)
>consensus
C___AAGGCUGCU___CGAGUGGCAGUCGGUGUU_UUAUCCGC_CUCCUCUCAAUCUCUUUGACUGCCGC__GCAU______UUCCAUUAUGUCAAUUU______GCCCCUUCAUCCU__
.................(((((((((((((.............................)))))))))))))................................................ ( -8.21 = -10.45 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:09 2006