Locus 5603

Sequence ID 3R_DroMel_CAF1
Location 14,787,558 – 14,787,675
Length 117
Max. P 0.524300
window9130

overview

Window 0

Location 14,787,558 – 14,787,675
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.95
Mean single sequence MFE -31.85
Consensus MFE -18.82
Energy contribution -18.62
Covariance contribution -0.21
Combinations/Pair 1.15
Mean z-score -2.76
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.524300
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14787558 117 - 27905053
UGCCAACACUUAUGCUCAAUAAAUGGGCAUAAAUCUG-GUC--CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGUCAAAAAAGCGAAAGCAGCACACAAACAACAAAAACACC
.((((....(((((((((.....)))))))))...))-)).--(((..((((((.((.(((....)))))))))))..)))........((....))....................... ( -31.80)
>DroPse_CAF1 44184 114 - 1
UGCCAACACUUAUGCCCAAUAAAUGGCCAUAAAUCUG-GGCAGCCGACUCGUUGGCGGCAUUAAAAUGCGCAACGACACGGCCACA---GCCCAGGCUUGACAAAAACAA--ACCUCAGC
.(((.....(((((.(((.....))).)))))...((-(((.((((..((((((.((.(((....)))))))))))..))))....---)))))))).............--........ ( -36.10)
>DroSec_CAF1 45830 117 - 1
UGCCAACACUUAUGCUCAAUAAAUGGGCAUAAAUCUG-GGC--CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGUCAAAAAAGCUAAAGCAGCACACAAACAACAAAAGCAUC
.(((.....(((((((((.....))))))))).....-)))--(((..((((((.((.(((....)))))))))))..)))........(((.....))).................... ( -30.80)
>DroSim_CAF1 47819 117 - 1
UCCCAACACUUAUGCUCAAUAAAUGGGCAUAAAUCUG-GGC--CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGUCAAAAAAGCUAAAGCAGCACACAAACAACAAAAGCAUC
.((((....(((((((((.....)))))))))...))-)).--(((..((((((.((.(((....)))))))))))..)))........(((.....))).................... ( -30.50)
>DroAna_CAF1 48548 112 - 1
UGCCAACACUUAUGCUCAAUAAAUGGCCAUAAAUCUGUGGA--CCGACUCGUUGGCGGCAUUAAAAUGCGUAGCGACACGGCCAAAA---CGAGA---GACCGAGAACAACAAAAACAUG
..............(((......((((((((....))))).--))).(((((((((.((((....))))((....))...))))..)---)))).---....)))............... ( -25.80)
>DroPer_CAF1 44289 114 - 1
UGCCAACACUUAUGCCCAAUAAAUGGCCAUAAAUCUG-GGCAGCCGACUCGUUGGCGGCAUUAAAAUGCGCAACGACACGGCCACA---GCCCAGGCUUGACAAAAACAA--ACCCCAGC
.(((.....(((((.(((.....))).)))))...((-(((.((((..((((((.((.(((....)))))))))))..))))....---)))))))).............--........ ( -36.10)
>consensus
UGCCAACACUUAUGCUCAAUAAAUGGCCAUAAAUCUG_GGC__CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGCCAAAA__GCCAAAGCAGCACAAAAACAACAAAAACAUC
.(((.....(((((.(((.....))).)))))......)))..(((..((((((.((.(((....)))))))))))..)))........((....))....................... (-18.82 = -18.62 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:08 2006