Locus 560

Sequence ID 3R_DroMel_CAF1
Location 2,091,018 – 2,091,109
Length 91
Max. P 0.525001
window890

overview

Window 0

Location 2,091,018 – 2,091,109
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 88.94
Mean single sequence MFE -31.75
Consensus MFE -29.13
Energy contribution -29.07
Covariance contribution -0.05
Combinations/Pair 1.15
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value -0.02
SVM RNA-class probability 0.525001
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2091018 91 + 27905053
UAUUGGCAUCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGACCCCCACCGAAUGGAGGGCUGGCAGGCGGUGGACGU
.....((.((((.(((..((((((((......))))))))......((.((((..((((((.....))).))))))).))))).)))).)) ( -32.70)
>DroSec_CAF1 233898 91 + 1
UAUUGGCAGCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGAUCCUCACCGAAUGGAAGGCUGGCAGGCGGUGGAUGU
(((((.(.((((((....((((((((......))))))))......((((((...((......)).)))))))))))).).)))))..... ( -32.30)
>DroSim_CAF1 236919 91 + 1
UAUUGGCAGCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGAUCCUCACCGAAUGGAAGGCUGGCAGGCGGUGGAUGU
(((((.(.((((((....((((((((......))))))))......((((((...((......)).)))))))))))).).)))))..... ( -32.30)
>DroEre_CAF1 235261 91 + 1
UACUGGCAGCCACUGUGCAGCAGGAAGGCGAACUCCUGUUGAGUAACUUCCAGGAUCCCCACCGAAUGGAGGGAUGGCAGGCGGUGGACGU
.....((..(((((((.((((((((.(.....))))))))).....((.(((...((((..((....)).))))))).)))))))))..)) ( -32.70)
>DroYak_CAF1 237753 91 + 1
UAUUGGCAGCCAGUGUGGAGCAGGAAGGCGAACUCCUGUUGAGAAACUUCCAGGAUCCCCACCGAAUGGAGGGCUGGCAGGCGGUGGACGU
(((((.(.((((((....(((((((.(.....))))))))......((((((...((......)).)))))))))))).).)))))..... ( -30.90)
>DroAna_CAF1 210737 91 + 1
UAUUGGCAGCCAGUUUAGAGCAGGAGGGUGGCCUUCUGAUGCGAAACUUUCAGGAUGUCAGUGGAAUGAAAGGCUGGCAGGCGGUGGACGU
(((((.(.((((((...(..(((((((....)))))))...)....((((((.....((....)).)))))))))))).).)))))..... ( -29.60)
>consensus
UAUUGGCAGCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGAUCCCCACCGAAUGGAAGGCUGGCAGGCGGUGGACGU
(((((.(.((((((....((((((((......))))))))......((((((..............)))))))))))).).)))))..... (-29.13 = -29.07 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:03 2006