Locus 5586

Sequence ID 3R_DroMel_CAF1
Location 14,763,295 – 14,763,409
Length 114
Max. P 0.643137
window9107

overview

Window 7

Location 14,763,295 – 14,763,409
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 92.54
Mean single sequence MFE -26.52
Consensus MFE -22.58
Energy contribution -22.86
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.31
Structure conservation index 0.85
SVM decision value 0.23
SVM RNA-class probability 0.643137
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14763295 114 - 27905053
CGCCAACCAUUUUCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUUUUCCCUGCUACAU
.((................((((((....))))))..(((...........((((.....)))).(((((((....((((...))))...))))))).....)))..))..... ( -25.10)
>DroSec_CAF1 22188 114 - 1
CCCCAACCAUUUCCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAAGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUUUUCCCUGCUACAU
.((((((............((((((....)))))).((((....((.((..(((((..((((...)))))))))..)))).))))))))))....................... ( -27.20)
>DroSim_CAF1 23383 114 - 1
CCCCAACCAUUUCCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUUCUCCCUGCUACAU
.((((((............((((((....)))))).((((....((.((..((((((..(((...)))))))))..)))).))))))))))....................... ( -27.30)
>DroEre_CAF1 22459 107 - 1
CCAUUUC------CAUUUCGAGUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUU-UCCCUGCUACAU
.....((------((....((((((....)))))).))))...........((((.....)))).(((((((....((((...))))...)))))))....-............ ( -25.10)
>DroYak_CAF1 22872 113 - 1
CCAUUUCCAUUUCCAUUUCGAGUUCGUUGGAAGUCUUGGAUACUCACGUUUAUGCUGGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUU-UCCCUGCUACAU
.....((((((((((...((....)).))))))...)))).......((....((.((.......(((((((....((((...))))...)))))))....-..)).)).)).. ( -27.92)
>consensus
CCCCAACCAUUUCCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUU_UCCCUGCUACAU
...................((((((....))))))..(((...........((((.....)))).(((((((....((((...))))...))))))).....)))......... (-22.58 = -22.86 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:46 2006