| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,080,079 – 2,080,171 |
| Length | 92 |
| Max. P | 0.628447 |
| Location | 2,080,079 – 2,080,171 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 82.25 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -16.14 |
| Energy contribution | -15.93 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.25 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.628447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2080079 92 + 27905053 GAAGGCUGUGGCGGGAUUUAAUGGGAUCUGUGACGGGCUCUGGAGGAGCCUGGGGCGAUCAGGCUGAAUUAAGAGAGAGAUAAAUAGCAAUA ....(((((..(..((((((....((((.((..(((((((.....)))))))..))))))....))))))..)..........))))).... ( -27.50) >DroSec_CAF1 222959 92 + 1 GAAGAUCUGUCCGGGAUAUAGUGGGAUCUGUGACGGGCUCUGGCAGAUUCUUUACGGAUCUGGCUGAAUUAAGAGAGAGAUCAAUAGCAAUA ...(((((.(((..(((.((((.((((((((((.((..((.....))..)))))))))))).)))).)))..).)).))))).......... ( -32.20) >DroSim_CAF1 225821 92 + 1 GGGGAUCUGGCCGGGAUCUAGUGGGAUCUUUGACGGCCUCUGGCAGAUUCUUUACGGAUCUGGCUGAAUUAAGAGAGAGAUCAAUAGCAAUA ...((((((((((((((((....))))))....)))))((.(.(((((((.....))))))).).))..........))))).......... ( -31.10) >consensus GAAGAUCUGGCCGGGAUAUAGUGGGAUCUGUGACGGGCUCUGGCAGAUUCUUUACGGAUCUGGCUGAAUUAAGAGAGAGAUCAAUAGCAAUA ...((((((...(((((((.((.((((((.....))).))).)))))))))...))))))..((((.(((........)))...)))).... (-16.14 = -15.93 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:01 2006