| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,725,182 – 14,725,288 |
| Length | 106 |
| Max. P | 0.511290 |
| Location | 14,725,182 – 14,725,288 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.57 |
| Mean single sequence MFE | -40.52 |
| Consensus MFE | -28.34 |
| Energy contribution | -28.78 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14725182 106 - 27905053 ACGGAACCAUUGCCACUCGACUGGGCCUGAAACCUGGGCCCAGAAUGGGCCAGGUCGAAUGGCGUCUCCGGCAAAUGACUGCGCUCCAUGCUCAGCUACCCGCAAC .((((.....(((((.((((((.((((((....(((....)))..)))))).)))))).)))))..))))((....(.(((.((.....)).)))).....))... ( -40.50) >DroPse_CAF1 133686 106 - 1 ACGGAUCGAUUGCCUCCUGUUUGGGCCUCGAAUCUCGGCCCCAGGAGUGCCAUGGCCAACGGCGGCUCUGGCAACAGACUGCGCUCCAUGCUCCGUCACCCGAUUC ..((((((.....((((((...(((((.........)))))))))))(((((.((((......)))).)))))...(((.(.((.....)).).)))...)))))) ( -43.90) >DroEre_CAF1 138817 106 - 1 ACGGAACCAUUGCCGCUCGACUGGGCCUGAAACCUGGGCCCAGAAAGGGCCAAGUCCAAUGGCGUCUCCGGCAAGUGAGUGCGCUCCAUGCUCAGCUACCCGCAGC .((((.((((((..((((..((((((((.......))))))))...))))......))))))....))))(((.(.(((....)))).)))...((.....))... ( -38.60) >DroYak_CAF1 151055 106 - 1 ACGGAACCAUUGCCGCUCGACUGGGCCUGGAACCUGGGCCCAGAAAGGGCCAGGUCGAAUGGCGUCUCUGGCAAAUGACUGCGCUCCAUGCUCAGCUACCCGCAAC .(((...(((((((((((..(((((((..(...)..)))))))...))))...(((....)))......))).)))).(((.((.....)).)))....))).... ( -40.00) >DroAna_CAF1 144396 106 - 1 ACGGAUCCAUUGCCGCCCGACUGGGCCUGGAACCUGGGCCCUGUGAGGGCCAAAGUCAAUGGCGUCUCCGGAAAAUGAGUGCUCUCCAUGCUCAGCUACCCGCAAC .((((.(((((((.((((.((.(((((..(...)..))))).))..))))....).))))))....)))).....(((((.........)))))((.....))... ( -38.80) >DroPer_CAF1 136178 106 - 1 ACGGAACGAUUGCCUCCUGUUUGGGCCUCGAACCUGGGCCCCAAGAGUGCCGUGGCCAACGGCGGCUCUGGCAACAGACUGCGCUCCAUGCUCCGUCACCCGAUUC .(((...(.(((((........((((((.......))))))..((((((((((.....))))).))))))))))).(((.(.((.....)).).)))..))).... ( -41.30) >consensus ACGGAACCAUUGCCGCCCGACUGGGCCUGGAACCUGGGCCCAGAAAGGGCCAAGGCCAAUGGCGUCUCCGGCAAAUGACUGCGCUCCAUGCUCAGCUACCCGCAAC .(((.....(((((....(((.((((((.......)))))).......((((.......)))))))...)))))....(((.((.....)).)))....))).... (-28.34 = -28.78 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:15 2006