Locus 5557

Sequence ID 3R_DroMel_CAF1
Location 14,697,390 – 14,697,497
Length 107
Max. P 0.918794
window9060

overview

Window 0

Location 14,697,390 – 14,697,497
Length 107
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 93.44
Mean single sequence MFE -38.22
Consensus MFE -35.68
Energy contribution -35.40
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -1.36
Structure conservation index 0.93
SVM decision value 1.12
SVM RNA-class probability 0.918794
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14697390 107 - 27905053
CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCAGAGCUGCGGAUUCGGACUCGGCGGCUUGAGAGCAGCAG-------CCGGCUGCCAAAUGCCAAAUGA
...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((....(.(((((..-------...))))))....)))...... ( -37.70)
>DroSec_CAF1 116232 107 - 1
CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCGGAGCUGCGGAUUCGGACUCGUCGGCUUGAGAGCAGCAG-------CCAGCUGCCAAAUGCCAAAUGA
..(((.(((((......(((((((((......))).(((((......))))))))))).))))).))).(((....(.(((((..-------...))))))....)))...... ( -37.90)
>DroSim_CAF1 120613 107 - 1
CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCGGAGCUGCGGAUUCGGACUCGGCGGCUUGAGAGCAGCAG-------CCAGCUGCCAAAUGCCAAAUGA
...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((....(.(((((..-------...))))))....)))...... ( -37.70)
>DroEre_CAF1 111666 113 - 1
CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCAGAGCUGCGGACUCGGACA-GGCGGCUUCAAAGCAGCAGCCAGCAGCCAGCUGCCAAAUGCCAAAUGA
...((((((((((....(((((((((......))).(((((......)))))))))))..)).))-)))(((......(((((.((.....))..))))).....)))..))). ( -42.00)
>DroYak_CAF1 117368 107 - 1
CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGUUCAUCCCAGAGCUGCAGAUUCGGACUCGGCGGCUUGAAAGCAGCAG-------CCAGCUGCCAAAUGCCAAAUGA
...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((......(((((..-------...))))).....)))...... ( -35.80)
>consensus
CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCAGAGCUGCGGAUUCGGACUCGGCGGCUUGAGAGCAGCAG_______CCAGCUGCCAAAUGCCAAAUGA
...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((......(((((............))))).....)))...... (-35.68 = -35.40 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:02 2006