a score=0
s 3R_DroMel_CAF1 14673179 97 + 27905053 UUUCAAUUCCACAACCCG--UCUGAAUUUUCAUUGUUCGAUUGUCGGUGGGGCAACGUCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUGG---GAUGUGGA-----
s DroSec_CAF1 88520 99 + 1 UUUCAAUUCCACAACCCGUGUCUGAAUUUUCAUUGUUCGAUUGUCGGUGGGGCAACGUCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUGG---GAUGUGGA-----
s DroSim_CAF1 95563 99 + 1 UUUCAAUUCCACAACCCGUGUCUGAAUUUUCAUUGUUCGAUUGUCGGUGGGGCAACGUCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUGG---GAUGUGGA-----
s DroEre_CAF1 87149 97 + 1 UUUCAAUUCCACAACCCG--UCUGAAAUUUCAUUGUUCGAUUGUCGUUGGGGCAACGGCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUUG---GAUGUGGA-----
s DroAna_CAF1 84220 91 + 1 --GGAAUUUCUCAAC--------------CCAUUGUUCGAUAGUCAGUGGUGCGACGUCAAUUGCCUUCAAUUGGCUCUAAUUUCACUUGGACGGAUAUGGACGGAG