Locus 550

Sequence ID 3R_DroMel_CAF1
Location 2,048,437 – 2,048,542
Length 105
Max. P 0.959418
window876

overview

Window 6

Location 2,048,437 – 2,048,542
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.27
Mean single sequence MFE -29.30
Consensus MFE -14.22
Energy contribution -15.00
Covariance contribution 0.78
Combinations/Pair 1.21
Mean z-score -2.34
Structure conservation index 0.49
SVM decision value 1.50
SVM RNA-class probability 0.959418
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2048437 105 - 27905053
CGA----------GCUGCACUUUGCUUUUACUUUUGCCUGCG--AAAAUUGUUUUUAGCAAAUUGCGGGCAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGUACGGCGGCCAC---AUGC
...----------...(((..((((((.....((((((((((--(...((((.....)))).))))))))))).....)))))).......(((((.........)))))...---.))) ( -33.60)
>DroVir_CAF1 240604 104 - 1
CUG----------GCU-UUGUUUGCUUUUACUUUUGCCUGC---AAAAUUGUUUUCUGCAAAUUACUCGCAAAUUAAUGAGCAGAAAAUUAACCACAUUAGAGCACUGCCCGCUC--CCU
..(----------((.-.(((((........(((((....)---))))..(((((((((..((((.........))))..)))))))))...........)))))..))).....--... ( -20.80)
>DroEre_CAF1 191492 99 - 1
---------------UGCACUUUGCUUUUACUUUUGCCUGCG--AAAAUUGUU-CCAGCAAAUUGCGGGCAAAUUAAUGAGCAGUAAAUUAGCUGCAUUAGUGCAGCGGCCAC---AUGC
---------------.((...((((((.....((((((((((--(...((((.-...)))).))))))))))).....)))))).......((((((....)))))).))...---.... ( -35.20)
>DroWil_CAF1 192114 116 - 1
GUGUGUGUGUUUUUGU-UUUUAUGCUUUUACUUUUGCCAGAGUAAAAAUUGUUUUCUGCAAAUUACAGGCAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGAGCAGUGGCCAC---AUGC
(((((((.((..((((-(((.((((((((((((......)))))))).((((.....))))......(((.((((.((.....)).)))).))))))).)))))))..)))))---)))) ( -32.10)
>DroMoj_CAF1 196511 106 - 1
CUG----------GCU-UUGUUUGCUUUUACUUUUGCCAGC---AAAAUUGUUUUGUGCAAAUUACUCGCAAUUUAAUGAGCAGAAAAUUAACCACAUUAGAGCACUGCCUGGCUAAUGU
.((----------(((-..((.((((((...((((((((..---.(((((((...(((.....)))..)))))))..)).)))))).............))))))..))..))))).... ( -21.49)
>DroAna_CAF1 168409 115 - 1
CAGUAUGUGCUUUGCCUUACUUUGCUUUUACUUUUGCCUGCG--AAAAUUGUUUUGUGCAAAUUGCGGGUAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGUACAAUGGCCAC---AUGC
..(((((((.......(((((..((((.....((((((((((--(...((((.....)))).))))))))))).....)))))))))....((((...........)))))))---)))) ( -32.60)
>consensus
CUG__________GCU_UACUUUGCUUUUACUUUUGCCUGCG__AAAAUUGUUUUCUGCAAAUUACGGGCAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGAGCAGUGGCCAC___AUGC
.....................((((((.....((((((((.....((.((((.....)))).)).)))))))).....)))))).......((((...........)))).......... (-14.22 = -15.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:50 2006