Locus 5492

Sequence ID 3R_DroMel_CAF1
Location 14,464,838 – 14,464,956
Length 118
Max. P 0.774678
window8963

overview

Window 3

Location 14,464,838 – 14,464,956
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 83.86
Mean single sequence MFE -17.93
Consensus MFE -15.28
Energy contribution -15.73
Covariance contribution 0.45
Combinations/Pair 1.07
Mean z-score -1.72
Structure conservation index 0.85
SVM decision value 0.54
SVM RNA-class probability 0.774678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14464838 118 - 27905053
UAUAUCUAUAAAUCCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCAAAUGCAAAAGAAAAAAGACUAAACCAAAAUAAAAAUUUGCUCAGACAAUAAAAAGGCGAAAUUAAGCGAC
..................(((...(((..(((((....)))))..)))...(((((...........................)))))..............)))............. ( -19.23)
>DroSim_CAF1 22744 111 - 1
------UAUAAAUCCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCAAAUGCAUAAAAAAAAAGACCAAACCAAAACAA-AAUAUGCUCAGACAAUAAAAAGGCGAAAUUAAGCGAC
------............(((...(((..(((((....)))))..)))...(((((........................-..)))))..............)))............. ( -19.87)
>DroYak_CAF1 24560 97 - 1
------UAUAAAACCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCUAAUGCAAA------AAGAC--------AACAA-AAUAUACUCAGACAAUAAAAAGGCGAAAUUAAGCGAC
------............(((....((..(((((....)))))..))...((....------....)--------)....-.....................)))............. ( -14.70)
>consensus
______UAUAAAUCCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCAAAUGCAAAA_AAAAAAGAC_AAACCAAAACAA_AAUAUGCUCAGACAAUAAAAAGGCGAAAUUAAGCGAC
..................(((....((..(((((....)))))..))....(((((...........................)))))..............)))............. (-15.28 = -15.73 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:29 2006