Locus 5478

Sequence ID 3R_DroMel_CAF1
Location 14,453,358 – 14,453,478
Length 120
Max. P 0.983338
window8929

overview

Window 9

Location 14,453,358 – 14,453,478
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.25
Mean single sequence MFE -31.64
Consensus MFE -29.40
Energy contribution -29.48
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.74
Structure conservation index 0.93
SVM decision value 1.94
SVM RNA-class probability 0.983338
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14453358 120 + 27905053
CCAAUUGUCGGCGAUAAAACACACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA
.......(((((.........(((...(((((...(((((((.((...((...(((..........)))...))...)))))))))..))))).))).(((((....))))))))))... ( -32.50)
>DroSec_CAF1 10551 120 + 1
CCAAUUGUCGGCGAUAAAACACACAACGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA
.......(((((.........(((..((((((...(((((((.((...((...(((..........)))...))...)))))))))..))))))))).(((((....))))))))))... ( -32.30)
>DroSim_CAF1 11128 120 + 1
CCAAUUGUCGGCGAUAAAACACACAACGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA
.......(((((.........(((..((((((...(((((((.((...((...(((..........)))...))...)))))))))..))))))))).(((((....))))))))))... ( -32.30)
>DroEre_CAF1 10288 120 + 1
CCAAUUGUUGGCGAUAAAACACACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGAGCUAAUACGAGUAUUAGCCGAGAA
((((((.((((((((((.............))))))((((((.((...((...(((..........)))...))...)))))))))))))))))).(((((((....)))))))...... ( -30.42)
>DroYak_CAF1 11667 119 + 1
CCAAUUGUCGGCGAUAAAACAUACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCA-AACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGGGGUAAUACGAGUAUUAGCCGAAAA
.......(((((...............(((((.......)))))..(((.((.((((((.-..((((((........))))))((.....))..)))))).)))))......)))))... ( -30.70)
>consensus
CCAAUUGUCGGCGAUAAAACACACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA
.......(((((.........(((...(((((...(((((((.((...((...(((..........)))...))...)))))))))..))))).))).(((((....))))))))))... (-29.40 = -29.48 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:57 2006