Locus 5462

Sequence ID 3R_DroMel_CAF1
Location 14,444,696 – 14,444,814
Length 118
Max. P 0.549698
window8889

overview

Window 9

Location 14,444,696 – 14,444,814
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 89.83
Mean single sequence MFE -15.81
Consensus MFE -11.72
Energy contribution -12.22
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.74
SVM decision value 0.03
SVM RNA-class probability 0.549698
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14444696 118 - 27905053
UAACUUCCUAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAACCAAUUACAGUCAUCAUCACAGUCAUUCAUUUAACACCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC
.(((((....((((((((...)))))))).......((((..............((.......)).((.(......).)).................)))).)))))........... ( -15.10)
>DroSec_CAF1 1845 118 - 1
UAACUUCCCAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAGCCAAUUACACUCAUCAUCACAGUCAUUCAUUUAACAGCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC
.(((((....((((((((...))))))))......((((.....)))).................................(((.............)))..)))))........... ( -17.32)
>DroSim_CAF1 1921 118 - 1
UAACUUCCUAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAACCAAUUACACUCAUCAUCACAGUCAUUCAUUUAACAGCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC
............((((((....((((((.....((((((...........................))))))........))))))........)))))).................. ( -14.65)
>DroEre_CAF1 1831 109 - 1
UAACUUCCUAAAACCCAGCAACUUGGGUUUGCUAAUGGCCAAAAACCAAUUACAUUCAUC---ACAGUCAU------CAGCCCAAAAAACAAAACUCGGCCCAAGUUCACUAAUUGCC
.(((((((..((((((((....))))))))(((.(((((.....................---...)))))------.)))................))...)))))........... ( -16.16)
>consensus
UAACUUCCUAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAACCAAUUACACUCAUCAUCACAGUCAUUCAUUUAACACCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC
.(((((....((((((((...)))))))).......((((.........................................................)))).)))))........... (-11.72 = -12.22 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:18 2006