Locus 5445

Sequence ID 3R_DroMel_CAF1
Location 14,367,527 – 14,367,629
Length 102
Max. P 0.952425
window8859

overview

Window 9

Location 14,367,527 – 14,367,629
Length 102
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -25.17
Consensus MFE -18.23
Energy contribution -18.14
Covariance contribution -0.09
Combinations/Pair 1.37
Mean z-score -2.10
Structure conservation index 0.72
SVM decision value 1.42
SVM RNA-class probability 0.952425
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14367527 102 - 27905053
UAUAUUUUCACGCGAU---------UACGUG--------UGUUUUUGGCCGUGUUUACAUGUGUUCAUAUGUGCAUAUGUGGCUUGGCUAAAUCGGAAAUAGUCAUAAUAUAGUAUUAU
..((((((((((((..---------..))))--------)...((((((((.(((.((((((((........))))))))))).))))))))..))))))).................. ( -29.50)
>DroSec_CAF1 146235 102 - 1
UAUAUUUUCACGCGAU---------UACGUG--------UGCUUUUGGCCGUGUUUACAUGUGUUCAUAUGUGCAUAUGUGGCUUGGCUAAAUCGGAAAUAGUCAUAAUAUAGUAUUAU
..((((((((((((..---------..))))--------)...((((((((.(((.((((((((........))))))))))).))))))))..))))))).................. ( -29.50)
>DroSim_CAF1 140595 102 - 1
UAUAUUUUCACGCGAU---------UACGUG--------UGUUUUUGGCCGUGUUUACAUGUGUUCAUAUGUGCAUAUGUGGCUUGGCUAAAUCGGAAAUAGUCAUAAUAUAGUAUUAU
..((((((((((((..---------..))))--------)...((((((((.(((.((((((((........))))))))))).))))))))..))))))).................. ( -29.50)
>DroEre_CAF1 153713 108 - 1
-AUAUUUUCACGCGAUUCGCACGAUUACGUG--------UGUUUUUGGUUGUGCUUACAUGUGUUCAUAC--GCAAUUGUGGCCUGGCUAAAUUGGAAAUAUUCAUAAUAUGGCAUUAU
-(((((((((.......((((((....))))--------))..((((((((.(((.((((((((....))--)))..)))))).)))))))).)))))))))................. ( -25.60)
>DroYak_CAF1 155191 107 - 1
-AAAUUUUCACGCGAU---------UACGUGUGUUUUUGUGUUUUUGGGUGUGUUUACAUGUGUUCAUAU--GCAUAUGUGGCUUGGCUAAAUUGGAAAUUUUCAUAAAAUAGUAUUAU
-.......((((((..---------..)))))).(((((((.((((.(((..((((((((((((......--)))))))))....)))...))).))))....)))))))......... ( -23.10)
>DroAna_CAF1 134943 86 - 1
UCUGUUUUUCGGCGAU---------UACGCG--------UGUUUGUGGGUAUGUUUACU----------------AAUGUGGUUUAGUUAAAACGGAAAUAGUCAUAAUAUGGAAUUAU
((((((((..(((...---------..((((--------(....(((((....))))).----------------.))))).....)))))))))))...................... ( -13.80)
>consensus
UAUAUUUUCACGCGAU_________UACGUG________UGUUUUUGGCCGUGUUUACAUGUGUUCAUAU__GCAUAUGUGGCUUGGCUAAAUCGGAAAUAGUCAUAAUAUAGUAUUAU
..(((((((.((((.............))))............((((((((.(((.((((((((........))))))))))).))))))))..))))))).................. (-18.23 = -18.14 +  -0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:50 2006