| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,353,736 – 14,353,841 |
| Length | 105 |
| Max. P | 0.998780 |
| Location | 14,353,736 – 14,353,841 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 69.86 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -11.08 |
| Energy contribution | -11.84 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.50 |
| SVM decision value | 3.22 |
| SVM RNA-class probability | 0.998780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14353736 105 + 27905053 GCACCGGCAUUCGGGC-UGCAAAUGAUUAAAAAUUCGCAGACGUCCAGAAUGCAAACAAAAAAUGGGCAAAAAAAUAGGGAAAAACAAAAUAC-ACUUUUUUCCCCA ((.(((((((((((((-(((.(((........))).)))...)))).))))))..........))))).........((((((((........-...)))))))).. ( -25.40) >DroSec_CAF1 132506 93 + 1 GCACCGGCAUUCGGGC-UGCAAAUGAUUAAAAAUUCGCAGACGUCCAGAAUGCAAACAAAAAAUGGG-----------GGAAAAACAAAAUAC-ACUUUUUUC-CCA ......((((((((((-(((.(((........))).)))...)))).))))))..........((((-----------..((((.........-..))))..)-))) ( -24.60) >DroSim_CAF1 128194 93 + 1 GCACCGGCAUUCGAGC-UGCAAAUGAUUAAAAAUUCGCAGACGUCCAGAAUGCAAACAAAAAAUGGG-----------GGAAAAACAAAAUAC-ACUUUUUUC-CCA ......((((((..((-(((.(((........))).)))).).....))))))..........((((-----------..((((.........-..))))..)-))) ( -22.60) >DroEre_CAF1 140556 99 + 1 GCAGCGGCAUUCGGGC-UGCA-AUGAUUAAAAAUUCGCAGACGUCCAGAAUGCAAAACAAAAAUGGCCAAAA--ACAGUGCAA---AAAGGGC-UCUUUUUUGUACA ...((.((((((((((-((((-((........))).)))...)))).))))))....((....)))).....--...((((((---(((((..-.))))))))))). ( -25.80) >DroMoj_CAF1 164203 84 + 1 CCAACUGCAGUGGAGCUUCCAUAUAAUUAAGAAUGCGCAGACAUUU----UGCAAAUAAAAA-------AUA--AAAA----UUUCU-----UUUAC-UUUUGUGCA ....((((.((((.....))))........(....)))))......----((((....((((-------.((--(((.----....)-----)))).-)))).)))) ( -12.70) >consensus GCACCGGCAUUCGGGC_UGCAAAUGAUUAAAAAUUCGCAGACGUCCAGAAUGCAAACAAAAAAUGGG__A_A__A_A_GGAAAAACAAAAUAC_ACUUUUUUC_CCA ......((((((((((.(((.(((........))).)))...)))).))))))...................................................... (-11.08 = -11.84 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:45 2006