Locus 5412

Sequence ID 3R_DroMel_CAF1
Location 14,248,826 – 14,248,917
Length 91
Max. P 0.645058
window8808

overview

Window 8

Location 14,248,826 – 14,248,917
Length 91
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.53
Mean single sequence MFE -35.37
Consensus MFE -31.30
Energy contribution -30.97
Covariance contribution -0.33
Combinations/Pair 1.20
Mean z-score -1.33
Structure conservation index 0.88
SVM decision value 0.23
SVM RNA-class probability 0.645058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14248826 91 - 27905053
AUUAA-------------UCG-CGCAGGCUCCAAGGCCUGGCACAUGCGGCUAACUUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGUUGCAAGCUGUGCG
.....-------------...-..((((((....))))))(((((((((((............(((.....)))((.(((.....)))))))))))...))))). ( -33.50)
>DroPse_CAF1 33572 82 - 1
-----------------------AAAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGUUGCAAGCUGUGCG
-----------------------....(((((((((...(((.......)))..)))))))))......((.(((((((((((.......))))).)))))).)) ( -35.60)
>DroWil_CAF1 25974 91 - 1
GAUCA-------------UCG-UCUAGGCUCAAAAGCCUGGCACAUGCGGCUAACAUUCGAGCGCCUGUCCGGCGGCUGCAACCUGCAUCGCUGCAAGCUGUGUG
.....-------------..(-.(((((((....)))))))).(((((((((......((..(....)..))((((((((.....)))..))))).))))))))) ( -33.00)
>DroMoj_CAF1 19310 104 - 1
AAUAAAUGAAAUACGCAUACGA-GCAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCCGGCGGCUGCAACCUGCAUCGCUGCAAGCUGUGCG
.............(((((((..-(((((((((((((...(((.......)))..)))))))))(((.....)))((.(((.....))))).))))..).)))))) ( -39.00)
>DroAna_CAF1 20843 91 - 1
AUUAA-------------UUA-CGCAGGCUCUAAGGCCUGGCACAUGCGGCUCACGUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGCUGCAAGCUAUGCG
.....-------------...-((((((((....))))((((...((((((....(((((((.....)))))))((.(((.....))))))))))).)))))))) ( -35.50)
>DroPer_CAF1 33050 82 - 1
-----------------------AAAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGUUGCAAGCUGUGCG
-----------------------....(((((((((...(((.......)))..)))))))))......((.(((((((((((.......))))).)))))).)) ( -35.60)
>consensus
A_UAA_____________UCG__GCAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGCUGCAAGCUGUGCG
........................((((((....))))))(((((((((((............(((.....)))((.(((.....)))))))))))...))))). (-31.30 = -30.97 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:02 2006