| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,981,191 – 1,981,298 |
| Length | 107 |
| Max. P | 0.697867 |
| Location | 1,981,191 – 1,981,298 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 67.50 |
| Mean single sequence MFE | -17.07 |
| Consensus MFE | -9.47 |
| Energy contribution | -9.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1981191 107 - 27905053 UGAAAAAAAAUUGUUUGAUCUUCGGAUCUAACAAGAUCAGCACAAUAUAUAUUUACACCGCUCACAUUACUUAAUGCAACGAUUUCUGCAGACUUUACUAAAAUUUU ..........(((((.((((....)))).)))))........................................((((........))))................. ( -13.80) >DroEre_CAF1 141681 99 - 1 -UAUC------AUUUUGAUCUUGGGAACUUACGAGAUCAGCA-ACUAUAUCUUGCAACCGCUUACAUUACCCGAUGCAACGACCUCAGAAUACUUUUCUGAAAUGUU -((((------....((((((((........))))))))(((-(.......)))).................)))).((((...((((((.....))))))..)))) ( -20.60) >DroYak_CAF1 146224 99 - 1 -UAGUAAAGCUAACUUGAUCUUGGUAACUUACAAGAUCAUUAAAUUACGUCUUACAAACGCUUACAUUACCUGAUGCAACGACUU-------CUUGUCUAAAAUCUU -..((((.((.....((((((((........)))))))).........((.......)))))))).......(((.....(((..-------...)))....))).. ( -16.80) >consensus _UAAAAAA__UAAUUUGAUCUUGGGAACUUACAAGAUCAGCA_AAUAUAUCUUACAACCGCUUACAUUACCUGAUGCAACGACUUC_G_A_ACUUUUCUAAAAUCUU ...............((((((((........))))))))...................((.((.((((....)))).)))).......................... ( -9.47 = -9.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:29 2006