Locus 5377

Sequence ID 3R_DroMel_CAF1
Location 14,120,840 – 14,120,939
Length 99
Max. P 0.584167
window8761

overview

Window 1

Location 14,120,840 – 14,120,939
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 95.79
Mean single sequence MFE -31.20
Consensus MFE -29.61
Energy contribution -29.42
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -1.45
Structure conservation index 0.95
SVM decision value 0.10
SVM RNA-class probability 0.584167
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14120840 99 - 27905053
AUUCAGAGGUUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUAGCCCUUUGUGAUGUGAUUGUGGUCUAGU
......((..((...(...(((..(((.(((((((((.(.(((((((....)))))..))..))))))).))).)))..)))...)....))..))... ( -32.70)
>DroSec_CAF1 7886 99 - 1
AUUCAGAGGUUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUAGCUCUUUGUGAUGUGAUUGUGGUCUAGU
......((..((...(...(((..(((.(((((((((.(.(((((((....)))))..))..))))))).))).)))..)))...)....))..))... ( -33.20)
>DroEre_CAF1 7917 99 - 1
AUUCAGAGGUUAAUGCUUUCCACGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUGGCCCUUUGUGAUGUGAUUGUGGUCUAGU
..((((((((....))))).(((((((.(((((((((.(.(((((((....)))))..))..))))))).))).)))))))...)))............ ( -31.40)
>DroYak_CAF1 9484 99 - 1
AUUCAGAGGAUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGAAGACGACUAAUGGAGCACUUGUGGCCCUUUGUGACGUGAUUUUGGUCUAGU
...((((((.....(((((....)))))(((((((((.(.(((((((....)))))..))..))))))).))))))))).(((.........))).... ( -27.50)
>consensus
AUUCAGAGGUUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUAGCCCUUUGUGAUGUGAUUGUGGUCUAGU
......((..((...(...((((((((.(((((((((.(.(((((((....)))))..))..))))))).))).))))))))...)....))..))... (-29.61 = -29.42 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:16 2006