Locus 537

Sequence ID 3R_DroMel_CAF1
Location 1,976,978 – 1,977,077
Length 99
Max. P 0.546657
window854

overview

Window 4

Location 1,976,978 – 1,977,077
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 86.60
Mean single sequence MFE -29.26
Consensus MFE -20.70
Energy contribution -22.02
Covariance contribution 1.32
Combinations/Pair 1.10
Mean z-score -1.67
Structure conservation index 0.71
SVM decision value 0.03
SVM RNA-class probability 0.546657
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1976978 99 - 27905053
AAGGAAUAGUCAACCGUAGAAUAUCGUGUUUUGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCU-CUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU
........((((((((((((.....((((.......((............)).......)))).((.-.....))..........))))))))))))... ( -25.74)
>DroSec_CAF1 134445 100 - 1
AAGGAACAGUCAACCGUAGAAUAUCGUGUUUGGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU
........((((((((((((.....((((..((...((............))....)).)))).((((...))))..........))))))))))))... ( -32.30)
>DroSim_CAF1 139074 100 - 1
AAGCAACAGUCAACCGUAGAAUAUCGUGUUUGGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU
........((((((((((((.....((((..((...((............))....)).)))).((((...))))..........))))))))))))... ( -32.30)
>DroEre_CAF1 137578 89 - 1
GAGA--CAGUCAACCGUAGAAUAUCAUGCUUGGAAUGCUAAAACCUGUAUGUUAUG---------CGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU
....--..((((((((((((....(((((..((..........)).)))))..(((---------(((...))))))........))))))))))))... ( -30.30)
>DroYak_CAF1 140985 100 - 1
AAGACACAGUCAAACGUAGAAUAAUAUUUUGGGAAUGCUAAAACCUGUAAGUUAUGCCUGCAUAGCGGCUUCCGCAUCGCCUUUGUCUGCGGCUGGCCUU
........((((..((((((.........((((((.(((...........((((((....))))))))))))).)).........))))))..))))... ( -25.67)
>consensus
AAGAAACAGUCAACCGUAGAAUAUCGUGUUUGGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU
........((((((((((((.....((((.......((............)).......)))).(((.....)))..........))))))))))))... (-20.70 = -22.02 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:28 2006