| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,033,367 – 14,033,475 |
| Length | 108 |
| Max. P | 0.981531 |
| Location | 14,033,367 – 14,033,475 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.30 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -15.68 |
| Energy contribution | -16.04 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14033367 108 + 27905053 AAUCUGAAACUUUUUUAUGGAUUCAGUUUUUACUCGCACAGCAGCUGUUGCUGUGACAGUUUUGCUUUUUGCUACUGCUACUGCUAUUUUGCUUGUGCUUUUUGCUUU ...(((((.((.......)).))))).........(((((((((..((.((.(((.((((...((.....)).)))).))).)).)).)))).))))).......... ( -26.60) >DroSec_CAF1 18692 99 + 1 AAUUAGAAACUU-U-UAUGGAUUCAGUUUUUACUCGCACAGCAGCUGUUGCUGUGACAGUUUUGCUUUUUGCUACUCCUACUGCUAUUUUGCUUGUGCUU-------U ...((((((((.-.-.........))))))))...(((((((((..((.((.(((..(((...((.....)).)))..))).)).)).)))).)))))..-------. ( -21.90) >DroSim_CAF1 19019 96 + 1 AAUUGGA--CUU-U-UUAUGAUUCAGUU-UUACUCGCACAGCAGCUGUUGCUGUGACAGUUUUGCUUUUUGCUACUGCUACUGCUAUUUUGCUUGUGCUU-------U (((((((--(..-.-....).)))))))-......(((((((((..((.((.(((.((((...((.....)).)))).))).)).)).)))).)))))..-------. ( -24.40) >DroEre_CAF1 19007 85 + 1 AAACCGACACUUUUUUAUGGAUUCAGUUUUUACUCGCGCAGCAGCUGUUGCUGUGACAGUUUUGCUUUUUGCCACUGC--------------UUCUGCU--------- ..................(((..((((....(((..((((((((...))))))))..)))...((.....)).)))).--------------.)))...--------- ( -16.80) >DroYak_CAF1 25019 92 + 1 AAUCCGACACUUUUUUAUGGAUUCAGUUUUUACUCGCGCAGCAGCUGUUGCUGUGACAGUUUUGCUUUUUGCAACUGCU-------UUUUGCUUCUGCU--------- ((((((...........)))))).(((....(((..((((((((...))))))))..)))...)))....(((...((.-------....))...))).--------- ( -18.80) >consensus AAUCCGAAACUUUUUUAUGGAUUCAGUUUUUACUCGCACAGCAGCUGUUGCUGUGACAGUUUUGCUUUUUGCUACUGCUACUGCUAUUUUGCUUGUGCUU_______U ...................................((((((((((....)))))..((((...((.....)).))))................))))).......... (-15.68 = -16.04 + 0.36)
| Location | 14,033,367 – 14,033,475 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.30 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.90 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14033367 108 - 27905053 AAAGCAAAAAGCACAAGCAAAAUAGCAGUAGCAGUAGCAAAAAGCAAAACUGUCACAGCAACAGCUGCUGUGCGAGUAAAAACUGAAUCCAUAAAAAAGUUUCAGAUU ..........(((((.((.........((..((((.((.....))...))))..))(((....)))))))))).........(((((.............)))))... ( -23.22) >DroSec_CAF1 18692 99 - 1 A-------AAGCACAAGCAAAAUAGCAGUAGGAGUAGCAAAAAGCAAAACUGUCACAGCAACAGCUGCUGUGCGAGUAAAAACUGAAUCCAUA-A-AAGUUUCUAAUU .-------((((....((......))....(((...((.....))...(((..(((((((.....)))))))..)))..........)))...-.-..))))...... ( -19.20) >DroSim_CAF1 19019 96 - 1 A-------AAGCACAAGCAAAAUAGCAGUAGCAGUAGCAAAAAGCAAAACUGUCACAGCAACAGCUGCUGUGCGAGUAA-AACUGAAUCAUAA-A-AAG--UCCAAUU .-------..(((((.((.........((..((((.((.....))...))))..))(((....))))))))))......-.............-.-...--....... ( -19.80) >DroEre_CAF1 19007 85 - 1 ---------AGCAGAA--------------GCAGUGGCAAAAAGCAAAACUGUCACAGCAACAGCUGCUGCGCGAGUAAAAACUGAAUCCAUAAAAAAGUGUCGGUUU ---------.((((..--------------(((((.((.....))...)))))..((((....))))))))........(((((((...(((......)))))))))) ( -22.10) >DroYak_CAF1 25019 92 - 1 ---------AGCAGAAGCAAAA-------AGCAGUUGCAAAAAGCAAAACUGUCACAGCAACAGCUGCUGCGCGAGUAAAAACUGAAUCCAUAAAAAAGUGUCGGAUU ---------.((((........-------.((((((((.....)))..)))))..((((....))))))))..............((((((((......))).))))) ( -20.20) >consensus A_______AAGCACAAGCAAAAUAGCAGUAGCAGUAGCAAAAAGCAAAACUGUCACAGCAACAGCUGCUGUGCGAGUAAAAACUGAAUCCAUAAAAAAGUGUCGGAUU ...............................((((.((.....))...(((..(((((((.....)))))))..)))....))))....................... (-13.30 = -13.90 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:39 2006