| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,021,827 – 14,021,932 |
| Length | 105 |
| Max. P | 0.713590 |
| Location | 14,021,827 – 14,021,932 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -53.10 |
| Consensus MFE | -30.17 |
| Energy contribution | -31.40 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14021827 105 + 27905053 UCCGCCGGGACCCAUUGGACCGCCAUCGC---------CGCCGGGCGGCAUUUGCCCGAGGGGACUGGGCGCUGGUCCGCCAGCAUUGUGGGGUCCA------CCCGGUCCAAUUCCAUU .......(((((...((((((.((((.((---------(((...)))))....((((.((....))))))(((((....)))))...))))))))))------...)))))......... ( -54.80) >DroVir_CAF1 7977 105 + 1 UCCACCGGGUCCCAUCGGGCCGCCAUCAC---------CGCCCGGCGGCAUCUGGCCGAGGGGACUGGGCGCUGGGCCACCGGCAUUAUGUGGUCCG------CCGGGUCCAAUGCCGUU .......((.(((..((((((((......---------.((((..((((.....))))((....))))))(((((....))))).....))))))))------..))).))......... ( -50.70) >DroGri_CAF1 9046 105 + 1 UCCCCCAGGGCCCAUUGGGCCACCAUCAC---------CGCCUGGUGGCAUCUGUGCCAGAGGACUGGGCGCCGGUCCGCCAGCAUUGUGUGGUCCA------CCGGGUCCGAUGCCAUU .......((((((..((((((((...((.---------.((.((((((.(((.(((((((....)).))))).)))))))))))..)).))))))))------..))))))......... ( -50.60) >DroWil_CAF1 8072 120 + 1 UCCGCCUGGGCCCAUUGGACCGCCACCGCCAUCAACUCCGCCAGGCGGCAUUUGACCCAAGGGACUUGGAGCCGGUCCACCAGCAUUGUGUGGACCUCCAGGGCCGGGUCCAAUGCCAUU ...((((((.(......((..((....))..))......)))))))((((((.(((((..((..((((((...((((((((......).))))))))))))).))))))).))))))... ( -54.10) >DroMoj_CAF1 9344 105 + 1 UCCGCCGGGUCCCAUUGGUCCGCCAUCAC---------CGCCCGGCGGCAUCUGGCCGAGUGGACUGGGUGCUGGGCCACCGGCAUUGUGAGGUCCA------CCAGGACCGAUGCCAUU ...(((((((.....(((....)))....---------.)))))))((((((.((((..(((((((.((((((((....))))))))....))))))------)..)).))))))))... ( -59.60) >DroAna_CAF1 6759 105 + 1 UCCACCUGGCCCCAUUGGUCCGCCAUCGC---------CACCGGGCGGCAUCUGGCCGAGGGGACUGGGAGCUGGUCCGCCGGCAUUGUGUGGGCCA------CCGGGUCCGAUGCCAUU ........((((...((((........))---------))..))))((((((..((((.(.((((..(...)..)))).))))).......(((((.------...)))))))))))... ( -48.80) >consensus UCCGCCGGGGCCCAUUGGACCGCCAUCAC_________CGCCCGGCGGCAUCUGGCCGAGGGGACUGGGCGCUGGUCCACCAGCAUUGUGUGGUCCA______CCGGGUCCAAUGCCAUU .......((((((..((((((((((..............((((((...(.(((.....))).).))))))(((((....)))))..)).))))))))........))))))......... (-30.17 = -31.40 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:29 2006