Locus 5338

Sequence ID 3R_DroMel_CAF1
Location 14,010,490 – 14,010,610
Length 120
Max. P 0.705478
window8702

overview

Window 2

Location 14,010,490 – 14,010,610
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.58
Mean single sequence MFE -42.28
Consensus MFE -32.50
Energy contribution -32.94
Covariance contribution 0.44
Combinations/Pair 1.18
Mean z-score -1.73
Structure conservation index 0.77
SVM decision value 0.36
SVM RNA-class probability 0.705478
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14010490 120 + 27905053
GAUGCGGAGGAAUCUUGCGAGUUCGAAGCCUCGCAAAACUGCGGAAGCCUGUCCACUGGCAGAAGCAUAGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCUGGAAUU
.((((.(((((.(((((((((........)))))))....((....))(((((....))))).......))..))))).))))..........(((((..(((....)))..)))))... ( -43.90)
>DroSec_CAF1 286717 120 + 1
GAUGCGGAGGAAUCUUGCGAGUUGGACACCUCGCAAAAGUGCGGAAGCCUGUCCACUGGCAGAAGCACUGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCUGGAAUU
.((((.(((((.(((((((((........))))))).(((((....(((........)))....)))))))..))))).))))..........(((((..(((....)))..)))))... ( -47.70)
>DroSim_CAF1 292150 120 + 1
GAUGCGGAGGAAUCUUGCGAGUUGGACACCUCGCAAAAGAGCGGAAGCCUGUCCACUGGCAGAAGCACUGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCAGGAAUU
.((((.(((((.(((.((.(((.(((((..((......))((....)).)))))))).))))).((.....))))))).))))..........(((.(..(((....)))..).)))... ( -40.20)
>DroEre_CAF1 273229 120 + 1
GAAGCAGAGGAAUCUUGCGAGUCCGACGCCUCGCAGAAAUGAGGUAGCCUGUCGACGGGCAGCAGCAUAGAGCUUUUGGGCAGAUUUAAGAAAUCUUGUUGGGUCUUUCCUUCAGGUAUU
((((.((((..((((.((((((((((.((((((......)))))).(((((....)))))...(((.....))).)))))).((((.....)))))))).)))))))).))))....... ( -35.20)
>DroYak_CAF1 299058 120 + 1
GAUGCGGAGGAAUCCUGAGAGUCGGACGCCUCACAGAAAUGAGGUAGCCUGUCGACAGGCAGAAGCAUAGAGCUCUUGGGCAAGUUGAGAAAGUCUUGUUGGCUUUUUCCCUCAGGAAUA
......((((...((..((((((....((((((......)))))).(((((....))))).........)).))))..))......(((((((((.....)))))))))))))....... ( -44.40)
>consensus
GAUGCGGAGGAAUCUUGCGAGUUGGACGCCUCGCAAAAAUGCGGAAGCCUGUCCACUGGCAGAAGCAUAGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCAGGAAUU
.((((.(((((.(((((((((........)))))))..........(((((((....)))))..))...))..))))).))))..........(((((..(((....)))..)))))... (-32.50 = -32.94 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:19 2006