Locus 5321

Sequence ID 3R_DroMel_CAF1
Location 13,931,209 – 13,931,304
Length 95
Max. P 0.691415
window8675

overview

Window 5

Location 13,931,209 – 13,931,304
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 91.54
Mean single sequence MFE -17.36
Consensus MFE -15.97
Energy contribution -16.13
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.18
Structure conservation index 0.92
SVM decision value 0.33
SVM RNA-class probability 0.691415
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13931209 95 - 27905053
GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGGAA----AA-A------AUAGGAAAAACAAACCAUA
(((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..........----..-.------................... ( -17.10)
>DroSec_CAF1 193198 102 - 1
GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGCAA----AAAAAAAAGAAUAGGAAAAACAAACCAUA
(((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..........----............................. ( -17.10)
>DroSim_CAF1 208081 96 - 1
GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGCAA----AAAA------AUAGGAAAAACAAACCAUA
(((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..........----....------................... ( -17.10)
>DroEre_CAF1 193848 100 - 1
GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGGAAUAGGAAAA------AUAGGAAAAACAAACCAUA
(((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..................------................... ( -17.10)
>DroYak_CAF1 214638 94 - 1
GGCUGACGUCAUAAAUGCAUGAAUACAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGG------AAAA------AUAGGAAAAACAAACCGUA
(((..(..(((.....((.((....)).)).(((((.......)))))...)))...)..)))....((((------....------..............)))). ( -17.57)
>DroAna_CAF1 193095 99 - 1
GGCUGACGUCAUAAAUGCAUAAAUGCAAGCGGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCAGAGC-GGAAAA------AAAGGAAACCCAAACCAUA
(((..(..(((....((((....))))....(((((.......)))))...)))...)..)))...........-((....------...(....).....))... ( -18.20)
>consensus
GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGGAA____AAAA______AUAGGAAAAACAAACCAUA
(((..(..(((....((((....))))....(((((.......)))))...)))...)..)))........................................... (-15.97 = -16.13 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:54 2006