| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,949,846 – 1,949,953 |
| Length | 107 |
| Max. P | 0.635952 |
| Location | 1,949,846 – 1,949,953 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -14.27 |
| Energy contribution | -16.33 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1949846 107 + 27905053 UGGCUAAAAGACAUUCACAAGCAAUUGCUGCUAUGAAGUUUGGCCCAGCAUGACAUUACACAUUUAAUGCUUUUGUUGAUAAAGAAUAUGACUUAUUAAUGUUAAUA .(((((((.....((((..((((.....)))).)))).)))))))(((((.(((((((......))))).)).)))))..........((((........))))... ( -21.90) >DroSec_CAF1 107744 99 + 1 UGGCUAAAAGGCAUUCACAAGCAAUUG---CUAUGCAGUUUGGCCUAGCAUACUAUUACAUAUGUAUUGCUAUUGUUGAUAAAGAAAAUAACUCAUUAAUAU----- .(((((((..((((...(((....)))---..))))..)))))))((((((((..........))).))))).(((((((..((.......)).))))))).----- ( -23.20) >DroSim_CAF1 109233 99 + 1 UGGCUAAAAUGCAUUCACAAGCAAUUG---CUAUGCAGUUUGGCCUAGCAUGACAUGACACACCUAAUGCUAUUGUUGAUAAAGAAAAUGUCUCAUUAAUAU----- .(((((((.(((((...(((....)))---..))))).)))))))((((((...............)))))).(((((((..(((.....))).))))))).----- ( -24.56) >consensus UGGCUAAAAGGCAUUCACAAGCAAUUG___CUAUGCAGUUUGGCCUAGCAUGACAUUACACAUCUAAUGCUAUUGUUGAUAAAGAAAAUGACUCAUUAAUAU_____ .(((((((..((((...(((....))).....))))..)))))))(((((...(((((......)))))....)))))............................. (-14.27 = -16.33 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006