Locus 531

Sequence ID 3R_DroMel_CAF1
Location 1,949,622 – 1,949,733
Length 111
Max. P 0.757513
window847

overview

Window 7

Location 1,949,622 – 1,949,733
Length 111
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.04
Mean single sequence MFE -29.17
Consensus MFE -17.34
Energy contribution -16.53
Covariance contribution -0.80
Combinations/Pair 1.19
Mean z-score -1.66
Structure conservation index 0.59
SVM decision value 0.49
SVM RNA-class probability 0.757513
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1949622 111 - 27905053
-UAUCUCUUGAUUCUGGGGGCUCGGUUCUAGCAAACUUGUCACUGGAGCA-------GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU
-.......((((((.((..((((.(((((((...........))))))).-------).)))..)))))).))......((((((((((.(((...))).))))))))))......... ( -34.30)
>DroPse_CAF1 90740 97 - 1
----------------------CAAUGCGAACAAACUUGUCACUAAAGCCGAGGCUGGAACUUUUUGAAUGCAUUCUUGGCGUUAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU
----------------------.((((((..((((....((.....(((....))).))....))))..))))))....((((((((((.(((...))).))))))))))......... ( -23.60)
>DroEre_CAF1 110413 90 - 1
----------------------CGGUUCCAGCAAACUUGUCACUGGAGCA-------GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUUUUGGUGCGAAAAGUUGGCGCAAAAUACUU
----------------------(((((((((...........)))))))(-------(((((........)).))))))((((((((((((((...))))))))))))))......... ( -32.20)
>DroYak_CAF1 113271 112 - 1
UCAUUUCUAGAUUCUGGGGGCUCGGUUGCAGCAAACUUGUCACUGGAGCA-------GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUUUUGGUGCGAAAAGUUGGCGCAAAAUACUU
.(((((..(((..((....(((((((.((((.....)))).))).)))).-------..))..))))))))........((((((((((((((...))))))))))))))......... ( -36.60)
>DroAna_CAF1 91943 90 - 1
----------------------CCUUUUUGGCAAACUUGUCACUGGAGCA-------GAACUUUCUGAAUGCAUUCUCGGCGCUAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU
----------------------.((((.(((((....)))))..))))((-------((....))))............((((((((((.(((...))).))))))))))......... ( -22.70)
>DroPer_CAF1 91435 97 - 1
----------------------CAAUGCGAACAAACUUGUCACUAAAGCCGAGGCUGGAAGUUUUUGAAUGCAUUCUUGGCGUUAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU
----------------------...((((....(((((..(((((((((....))).((((((....(((((.......)))))))))))))))))....)))))..))))........ ( -25.60)
>consensus
______________________CGGUUCCAGCAAACUUGUCACUGGAGCA_______GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU
.....................................(((....(((((...........))))).....)))......((((((((((.(((...))).))))))))))......... (-17.34 = -16.53 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006