Locus 5295

Sequence ID 3R_DroMel_CAF1
Location 13,821,725 – 13,821,815
Length 90
Max. P 0.687619
window8637

overview

Window 7

Location 13,821,725 – 13,821,815
Length 90
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.28
Mean single sequence MFE -22.67
Consensus MFE -5.25
Energy contribution -5.62
Covariance contribution 0.37
Combinations/Pair 1.39
Mean z-score -2.72
Structure conservation index 0.23
SVM decision value 0.32
SVM RNA-class probability 0.687619
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13821725 90 - 27905053
CUUACCCUUUUGCCGGA--------UUUUUGAAAAGUUCAAAUGGCAUGAAAAUGCAGCAGAAUAAACAAAAAUUAAGC--CGGAAAAA--AAAGGGAAAUA
....(((((((.(((((--------((((((....((((.....((((....))))....))))...)))))))....)--)))....)--))))))..... ( -26.30)
>DroSec_CAF1 93547 88 - 1
CUUGC-CUUUUGCCGGA--------UUUUUGAAAAUUUCAAAUGGCAUGAAAAUGCAGCAGAAUAAACAAGAAUUUAGC--CGGAAAA---AAGGGGAAAUA
.((.(-(((((.(((((--------((((((.....(((.....((((....))))....)))....)))))))....)--)))...)---))))).))... ( -23.20)
>DroSim_CAF1 95640 89 - 1
CUUGCCCUUUUGCCGGA--------UUUUUGAAAAGUUCAAAUGGCAUGAAAAUGCAGCAGAAUAAACAAGAAUUAAGC--CGGAAAA---AAGGGGAAAUA
....(((((((.(((((--------((((((....((((.....((((....))))....))))...)))))))....)--)))...)---))))))..... ( -26.40)
>DroEre_CAF1 91584 88 - 1
CACGCCCUUUUCCCCGA--------UUUUUGAGCAGUUCAAAUGGCACGAAAAUGUAGCAGAAUAAACAAGAAUUAAGC--CGGGAA----AAAGGGAAAUG
....(((((((.(((((--------((((((.((.((....)).)).)))))))...((..(((........)))..))--)))).)----))))))..... ( -22.80)
>DroYak_CAF1 100861 87 - 1
C-CGCCCUU-UCCCUCA--------UUUUUGAACAGUUCAAAUGGCACGAAAAUUUAACAGAAUAAACCAGUAUUAAGC--CGGAAAA---AAAGGGAAAUG
.-.....((-(((((.(--------((((((..((.......))...))))))).............((.((.....))--.))....---..))))))).. ( -12.80)
>DroAna_CAF1 92775 102 - 1
ACACCCCUCUUGCGGCAGUCUGCUGCUCUCGGCCAGGUCAAAUAGCCCGAAAAUGCAGCAGGGCAAACAAAAAUUAAGCGUCUGAUCGAAACGUGUGUAAAG
((((((((.(((((((((....))))).((((.(..........).))))....)))).))))..............((((.........)))))))).... ( -24.50)
>consensus
CUUGCCCUUUUGCCGGA________UUUUUGAAAAGUUCAAAUGGCACGAAAAUGCAGCAGAAUAAACAAGAAUUAAGC__CGGAAAA___AAAGGGAAAUA
....((((((..(((............((((((...))))))..(((......))).........................))).......))))))..... ( -5.25 =  -5.62 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:17 2006