Locus 5284

Sequence ID 3R_DroMel_CAF1
Location 13,799,746 – 13,799,852
Length 106
Max. P 0.803297
window8622

overview

Window 2

Location 13,799,746 – 13,799,852
Length 106
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 89.88
Mean single sequence MFE -23.76
Consensus MFE -19.95
Energy contribution -20.83
Covariance contribution 0.87
Combinations/Pair 1.07
Mean z-score -1.74
Structure conservation index 0.84
SVM decision value 0.62
SVM RNA-class probability 0.803297
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13799746 106 - 27905053
GGCAUUUAGCCUACAACGCAAUUUCAAUUGUGCUCUUUCUAAGAAAUGUCUUUGUUGGAAAUGCACAAUGGAAAAACC------UUACGUACAAUCCUUAUUUAUAGAGCCA
(((.((((((.......))..((((.(((((((..(((((((.(((....))).))))))).))))))).))))....------....................))))))). ( -24.30)
>DroSec_CAF1 71939 111 - 1
GGCAUUUAGCCUAGAACGCUAUUUCAAUUGUGCUCCUUCUUGGAAAUGUCUUUGU-GGAAAUGCACAAUAGAAAAACCUUUUCCUUACGUACAAUCCUUAUUUAUAGAGCCA
(((...((((.......))))((((.((((((((((..(..(((....)))..).-)))...))))))).))))..................................))). ( -23.00)
>DroSim_CAF1 72665 112 - 1
GGCAUUUAGCCUAGAACGCUAUUUCAAUUGUGCUCCUUCUUGGAAAUGUCUUUGUUGGAAAUGCACAAUGGAAAAACCUUUUCCUUACGUACAAUCCUUAUUUAUAGAGCCA
(((...((((.......))))..((.((((((((((..(..(((....)))..)..)))...)))))))(((((.....)))))......................))))). ( -24.00)
>DroEre_CAF1 70217 112 - 1
GGCAUUUAGCCCACAAUGGUAUUUCAAUUCUGCUCUUUCUUAGAAAUGUCUUUGUGGGAAAUGCACAAUAGAAAACCCUUUUUCUUACAUACAAUCCUUGUUUAUAGAGCCA
(((.((((.(((((((.(..(((((.................)))))..).)))))))...((......((((((....))))))......))...........))))))). ( -23.73)
>consensus
GGCAUUUAGCCUACAACGCUAUUUCAAUUGUGCUCCUUCUUAGAAAUGUCUUUGUUGGAAAUGCACAAUAGAAAAACCUUUUCCUUACGUACAAUCCUUAUUUAUAGAGCCA
(((...((((.......))))((((.(((((((...((((((.(((....))).))))))..))))))).))))..................................))). (-19.95 = -20.83 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:03 2006