| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,942,031 – 1,942,123 |
| Length | 92 |
| Max. P | 0.972940 |
| Location | 1,942,031 – 1,942,123 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 85.38 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -19.97 |
| Energy contribution | -19.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1942031 92 + 27905053 CACACAGAACUGGGCACAAAUAAAACUACUCCGAGGACUGCUAGUUCUGCUAGUCCUCCCAGUGCUCCUACUGCUCCUAGUUGGCUCCUAGU ........((((((............((((..(((((((((.......)).)))))))..))))..((.((((....)))).))..)))))) ( -24.50) >DroSec_CAF1 100285 76 + 1 CACACAGAACUGGGCACAAAUAAAACUACUCCGAGGACUGC---------UAGUCCUCCUAGUGCUACUACUUCUCCUAGUUGGC------- .......(((((((............((((..((((((...---------..))))))..))))...........)))))))...------- ( -19.50) >DroSim_CAF1 101686 76 + 1 CACACAGAACUGGGCACAAAUAAAACUACUCCGAGGACUGC---------UAGUCCUCCUAGUGCUCCUACUGCUCCUAGUUGGC------- .......(((((((..((........((((..((((((...---------..))))))..)))).......))..)))))))...------- ( -20.36) >consensus CACACAGAACUGGGCACAAAUAAAACUACUCCGAGGACUGC_________UAGUCCUCCUAGUGCUCCUACUGCUCCUAGUUGGC_______ .......(((((((............((((..((((((((..........))))))))..))))...........))))))).......... (-19.97 = -19.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:18 2006