| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,729,991 – 13,730,091 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 13,729,991 – 13,730,091 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 92.42 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -22.54 |
| Energy contribution | -21.60 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13729991 100 + 27905053 UGCAAGUUGCGUUUCUCCCUUUGCGGGGAAAAUGUUUGGCAAAACUUUUCCAGUUUUAGCAGCUUAAACUUUCAUUUUGGAGCAAAGCGCACAUUUUGGG ..((((.(((((((((((........((((((.((((....))))))))))(((((.((...)).)))))........))))..)))))))...)))).. ( -23.10) >DroSec_CAF1 3261 98 + 1 UGCAAGUUGCGUUUCUCCCUUUGCGGGGAAAAUGUUUGGCAAAACUUUUCCAGU-UUAGCAGCUUAAACUUUCAUUUGGGAGCAAAGCGCAAAU-UUGGG ..(((((((((((((((((.......((((((.((((....))))))))))(((-((((....))))))).......)))))..)))))).)))-))).. ( -30.60) >DroEre_CAF1 2774 98 + 1 UGCAAGUUGCGUUUCCCCGCUUGCGGGGAAAAUGUUUGGCAGAACUUUUCCAGU-UUAGCAGCUUAAACUUUCACUUUAGAGCAAAGAGUAAAU-UUGGG ((((((((((.((((((((....))))))))..........(((((.....)))-)).)))))))......((......)))))..........-..... ( -26.80) >DroYak_CAF1 2974 98 + 1 UGCAAGUUGCAUUUCCCCCUUUGCGGGGAAAAUGUUUGGCAGAACUUUUCCAGU-UUAGCAGCUUAAGCUUUCAUUUUAGAGCAAAGCGCAAAU-UUGGG ..((((((((.(((((((......))))))).......((.(((((.....)))-)).)).((((..(((((......))))).)))))).)))-))).. ( -28.40) >consensus UGCAAGUUGCGUUUCCCCCUUUGCGGGGAAAAUGUUUGGCAAAACUUUUCCAGU_UUAGCAGCUUAAACUUUCAUUUUAGAGCAAAGCGCAAAU_UUGGG ((((((((((.(((((((......)))))))..((((....)))).............)))))))...((((......))))......)))......... (-22.54 = -21.60 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:38 2006