Locus 525

Sequence ID 3R_DroMel_CAF1
Location 1,932,608 – 1,932,715
Length 107
Max. P 0.842808
window838

overview

Window 8

Location 1,932,608 – 1,932,715
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 89.06
Mean single sequence MFE -28.57
Consensus MFE -25.11
Energy contribution -25.67
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.13
Structure conservation index 0.88
SVM decision value 0.76
SVM RNA-class probability 0.842808
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1932608 107 + 27905053
AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACCCGAACCGGUUCGCAAACUGGAACCAUAUCAAUAGGUUUGGCCCGAACCAGAAUCGGAACAAAGCGGAAAAUG
.(((..((((((((..((..((((......))))..)).)))))))).....((....))..)))...(.((((..((((.......))))..)))).)........ ( -25.30)
>DroSec_CAF1 90839 106 + 1
AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACGCGAACCGGUUCACAGACCGGAACCUUAUCAAUUGGUUAGGUUCGAACCGCGAACGGAACCAAGCC-AAAAUA
.......(((((((..((.(((((......))))).)).))))))).......((...........((((((..(((((.....)))))..)))))).))-...... ( -30.90)
>DroSim_CAF1 92266 106 + 1
AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACGCGAACCGGUUCACAAACCGGAACCUUAUCAAUAGGUUAGGUUCGAACCCCGAACGGAACCAAGCC-AAAAUG
.......(((((((..((.(((((......))))).)).))))))).....(((((((((.(((....))).))))))(.....)...))).........-...... ( -29.50)
>consensus
AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACGCGAACCGGUUCACAAACCGGAACCUUAUCAAUAGGUUAGGUUCGAACCACGAACGGAACCAAGCC_AAAAUG
.....(((((((((..((.(((((......))))).)).)))))))........((((((.(((....))).)))))))).((......))................ (-25.11 = -25.67 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:13 2006