Locus 5237

Sequence ID 3R_DroMel_CAF1
Location 13,688,299 – 13,688,404
Length 105
Max. P 0.958563
window8544

overview

Window 4

Location 13,688,299 – 13,688,404
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.58
Mean single sequence MFE -34.34
Consensus MFE -27.28
Energy contribution -29.16
Covariance contribution 1.88
Combinations/Pair 1.03
Mean z-score -2.22
Structure conservation index 0.79
SVM decision value 1.49
SVM RNA-class probability 0.958563
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13688299 105 + 27905053
UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAAGAACGA---------------CAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU
..((((((((.(((((......(((((........)))))....)))))...((---------------......((((..((((...))))..))))......))))))))))...... ( -28.50)
>DroSec_CAF1 15430 120 + 1
UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU
..((((((((..((((((((.....)))...(((.(((..........))).)))...)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -34.70)
>DroSim_CAF1 15607 120 + 1
UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU
..((((((((..((((((((.....)))...(((.(((..........))).)))...)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -34.70)
>DroEre_CAF1 10058 120 + 1
UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUACAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU
..((((((((..((((((((.....))).((((..(((.......)))..))))....)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -35.10)
>DroYak_CAF1 10296 120 + 1
UUUACGAGCCACUUGCCGCUUUGCCAGCAUCGUCUUUGGUCAUUACAACAAAGACAACGGCAGAAGGAACAUAUUAUUAUGGCAGCCAUUGUUGUUAUUCCACAUCGGUUCGUGUUUCUU
..((((((((..((((((((.....)))...(((((((..........)))))))...)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -38.70)
>consensus
UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU
..((((((((..((((((((.....))).((((..(((.......)))..))))....)))))..((((((((....))))(((((....)))))..)))).....))))))))...... (-27.28 = -29.16 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:49 2006