Locus 520

Sequence ID 3R_DroMel_CAF1
Location 1,914,315 – 1,914,406
Length 91
Max. P 0.539340
window832

overview

Window 2

Location 1,914,315 – 1,914,406
Length 91
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 74.09
Mean single sequence MFE -12.41
Consensus MFE -6.84
Energy contribution -6.95
Covariance contribution 0.11
Combinations/Pair 1.08
Mean z-score -1.75
Structure conservation index 0.55
SVM decision value 0.01
SVM RNA-class probability 0.539340
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1914315 91 - 27905053
ACAAACGCAACAUUG-UUUAACUUAGUUCUGCUUUAAAAUAAGCUGGGUAAACUUACCCUUAAAAUCUUUGCCACUCUUCAUUUUCCCUCCC
......((((.....-(((((.........((((......)))).(((((....))))))))))....)))).................... ( -12.80)
>DroSec_CAF1 72868 79 - 1
AUAAAAC--UCGUGCCUUUA-CAUAGUUGUGCUUUAAAAUAAGCUGAGCAAAGUUAGCCCAAAAAUCUUUGCCACACAAA----------CA
.......--..(((......-.........((((......))))((.((((((.............)))))))))))...----------.. ( -11.42)
>DroSim_CAF1 73630 90 - 1
AUAAAAC--UCGUGCCUUUAACUUAGUUUUGCUUUAAAAUAAGCUGAGCAAAGUUAGCCCUAAAAUCUUUGCCACACAUCAUUUUUACUCCC
.......--..(((....((((((.((((.((((......)))).)))).))))))((............))..)))............... ( -13.00)
>consensus
AUAAAAC__UCGUGCCUUUAACUUAGUUCUGCUUUAAAAUAAGCUGAGCAAAGUUAGCCCUAAAAUCUUUGCCACACAUCAUUUU__CUCCC
..............................((((......))))((.((((((.............)))))))).................. ( -6.84 =  -6.95 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:07 2006