Locus 5191

Sequence ID 3R_DroMel_CAF1
Location 13,612,177 – 13,612,268
Length 91
Max. P 0.801674
window8474

overview

Window 4

Location 13,612,177 – 13,612,268
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.25
Mean single sequence MFE -29.90
Consensus MFE -17.88
Energy contribution -21.13
Covariance contribution 3.25
Combinations/Pair 1.17
Mean z-score -2.10
Structure conservation index 0.60
SVM decision value 0.62
SVM RNA-class probability 0.801674
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13612177 91 - 27905053
UUGCGCGUCGCAGGUGCGAUUAUGCACAUUAGAUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG-CUGAUAAGCCAGCU---
((((((...((((((((((..((((((....).))))))))))))))).((....))..))))))....(((((..(-((....))))))))--- ( -32.00)
>DroSec_CAF1 61052 91 - 1
UUGCGCGUCGCAGGUGCGAUUGUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG-CUGAUAAGCCAGCU---
((((((...((((((((((..((((((.....)))))))))))))))).((....))..))))))....(((((..(-((....))))))))--- ( -36.00)
>DroSim_CAF1 54768 91 - 1
UUGCGCGUCGCAGGUGCGAUUGUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG-CUGAUAAGCCAGCU---
((((((...((((((((((..((((((.....)))))))))))))))).((....))..))))))....(((((..(-((....))))))))--- ( -36.00)
>DroEre_CAF1 52207 79 - 1
UUGCGCGACGCAGGUGCGAU---------UAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUG----CUGAUAAGCCAGCU---
((((((...((((((((((.---------.........)))))))))).((....))..))))))....(((((----((....)).)))))--- ( -26.40)
>DroYak_CAF1 53526 88 - 1
UUGCGCGACGCAGUUGCGAUUAUGCACAUUAGGUGCAUUAGUAUCUGUCGUUUUGACAAGUGCAACUCCAGCUG----CUGAUAAGCCAGCU---
(((((((((((((.(((....((((((.....))))))..))).))).)))).......))))))....(((((----((....)).)))))--- ( -29.21)
>DroAna_CAF1 52233 82 - 1
UUACGCGAUACAGAUACACAGACGCAGAU-----ACAGAUGCAUC--------UGACAAGUGCAAGUCCAGCUGCUGGCUGAUAAGCGGGCUCUG
..........((((....((((.(((...-----.....))).))--------))..................(((.(((....))).))))))) ( -19.80)
>consensus
UUGCGCGACGCAGGUGCGAUUAUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG_CUGAUAAGCCAGCU___
((((((...((((((((((..(((((.......))))))))))))))).((....))..))))))....(((((((........))).))))... (-17.88 = -21.13 +   3.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:42 2006