Locus 5188

Sequence ID 3R_DroMel_CAF1
Location 13,596,411 – 13,596,521
Length 110
Max. P 0.592073
window8470

overview

Window 0

Location 13,596,411 – 13,596,521
Length 110
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 83.40
Mean single sequence MFE -27.23
Consensus MFE -18.76
Energy contribution -18.90
Covariance contribution 0.14
Combinations/Pair 1.12
Mean z-score -1.97
Structure conservation index 0.69
SVM decision value 0.12
SVM RNA-class probability 0.592073
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13596411 110 + 27905053
-UGACAUAAAGCCAGAGGAUAUA--GAUUAUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACAGUCAUAU
-...............((((((.--.(((..((((((((((..((.((....)).))...))))).)))))....)))..))))))....(((((((((...))))))))).. ( -31.00)
>DroSec_CAF1 45418 112 + 1
-UGACAUAAAGCCAAAGAAUAUAUAUAUAGUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAAACUGUCAUAU
-(((((............((((.(((.(((.((((((((((..((.((....)).))...))))).))))).))).))).)))).((((((....))))))....)))))... ( -27.90)
>DroSim_CAF1 39108 110 + 1
-UGACAUAAAGCCAGAGGAUAUA--GAUUCUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU
-(((((..........((((((.--.((((.((((((((((..((.((....)).))...))))).)))))...))))..))))))(((((....))))).....)))))... ( -33.20)
>DroEre_CAF1 36134 111 + 1
AAAUCAGAGAACCAUUACAACUA--GUUUCUACUUACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU
...((((((((..((((....))--))))).((((((((((..((.((....)).))...))))).))))))))))...((((((((((((....)))))).)).)))).... ( -25.50)
>DroWil_CAF1 46900 110 + 1
-UUAUUUCAAGAAUUGGGUUUUU--AAUUUCACUUACGUAUUGGAAUGGAAACAUUUAAUAUGUGCUGAGUUUUGUAUGGAUAUCCACACAUAAUUGUUUGAUACUGUCAUGU
-.....((((((((((.......--...((((..(((((((((.((((....))))))))))))).))))...(((.(((....))).)))))))).)))))........... ( -21.90)
>DroYak_CAF1 36597 111 + 1
GAAUCAUGGAACCUUUUAAACUA--GUUUCUACUUACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU
...(((.((((.((........)--).))))((((((((((..((.((....)).))...))))).)))))..)))...((((((((((((....)))))).)).)))).... ( -23.90)
>consensus
_UGACAUAAAGCCAUAGGAUAUA__GAUUCUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU
...............................((((((((((..((.((....)).))...))))).)))))........((((((((((((....)))))).)).)))).... (-18.76 = -18.90 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:38 2006