Locus 5173

Sequence ID 3R_DroMel_CAF1
Location 13,571,275 – 13,571,372
Length 97
Max. P 0.549139
window8452

overview

Window 2

Location 13,571,275 – 13,571,372
Length 97
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 82.10
Mean single sequence MFE -24.70
Consensus MFE -13.73
Energy contribution -15.98
Covariance contribution 2.25
Combinations/Pair 1.05
Mean z-score -2.25
Structure conservation index 0.56
SVM decision value 0.03
SVM RNA-class probability 0.549139
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13571275 97 + 27905053
ACACCAUC---AUGGCUCCCAUGGCCAGCAGAGCCAUCACAAUCAUCACCAUCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC
......((---.(((((.....)))))...))((.(((((...........((((((....))))))((((((....))))))))))).))---......... ( -28.70)
>DroPse_CAF1 27611 97 + 1
CCAUCAUCAUCAUCACAGCCAUA---AUCACGGCCAGCACAACCC---CCACAGGAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGCACAAAGACCGCC
...........(((...(((...---.....)))..(((...((.---.....)).))).)))(((.((((((....))))))(((....)))......))). ( -18.60)
>DroSec_CAF1 13197 97 + 1
ACACCAUC---AUGGCUCCCAUGGCCAGCAGAGCCAUCACAAUCCUCACCAUCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC
......((---.(((((.....)))))...))((.(((((...........((((((....))))))((((((....))))))))))).))---......... ( -28.70)
>DroSim_CAF1 12299 97 + 1
ACACCAUC---AUGGCUCCCAUGGCCAGCAGAGCCAUCACAAUCCUCACCAUCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC
......((---.(((((.....)))))...))((.(((((...........((((((....))))))((((((....))))))))))).))---......... ( -28.70)
>DroYak_CAF1 11753 97 + 1
ACACCACA---UUGGCUCCCAGAGCCAUCACACCCAUCCCAACCAUCACCACCGCAUACCAAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC
........---..(((((...)))))(((((.....................(((((....))))).((((((....))))))))))).((---......)). ( -24.90)
>DroPer_CAF1 28784 97 + 1
CCAUCAUCAUCAUCACAGCCAUA---AUCACGGCCAGCACAACCC---CCACAGGAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGCACAAAGACCGCC
...........(((...(((...---.....)))..(((...((.---.....)).))).)))(((.((((((....))))))(((....)))......))). ( -18.60)
>consensus
ACACCAUC___AUGGCUCCCAUAGCCAGCACAGCCAUCACAACCCUCACCACCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC___AAGACCGCC
............(((((.....))))).....((.(((((.............((((....))))..((((((....))))))))))).))............ (-13.73 = -15.98 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:20 2006